| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2934 |
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| Symbol | |
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| ID | 3566202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 3161618 |
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| End bp | 3164485 |
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| Gene Length | 2868 bp |
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| Protein Length | 955 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637681403 |
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| Product | PAS |
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| Protein accession | YP_286134 |
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| Protein GI | 71908547 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG3452] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000000914767 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCGCG GCGTCTTTAA TACGGTCATG GCCTTGCTGG TCTGCGGAAT GGCTTTGGCG
GCCTATGTCG GCGAGCGAAT CAACGATGAG CGTTATATCG GCGCTGTCCG CGGCGAAGTT
CAGCAGAATC TGATCCGGAC CCGGGACCGA TTGGACAGCA ATCTCAACAG CGATATCCAG
CTGGTTCGAG GTCTGGTCGG GGTCATCGCT CTGGAGCCGG ATCTGGTTCA GGCTCGTTTT
GAACGGGCAG TCCAGCCGTT GTTTGCCGGC CGCACGCAGT TGCGCAGTAT TGCCGTCGCC
CCCGACATGA TGATTCGCCT GATTTACCCC ACGCAGGGCA ACCAGAAGGC CATTGGTTTC
GACTACCGGA AAAGCCCTGG ACAGTTCGAG GCAGCGGATC GGGCAAGGCT GACTCGTCAG
ATCGTCCTGG CTGGCCCGTT GAGTCTGGTT CAGGGCGGCG TCGGCATCGT GGCACGCTTG
CCGGTTTTTC TGCCGGATGG TGAGGGGCAG GAGCGTTTCT GGGGGATTGT CAGCGCGGTT
GTCGATGCAG AATTGCTGTA CCGGAATAGC GGTTTGCGGG ATGATAACTC GCCGATCGAG
ATCGCAATCC GCGGCACCGA TGGGAAAGGG AGCGAAGGGG GCGTCTTCTT CGGTCGCCCT
GCATTGTTTG CCGAGTCGCC GGTGCTGGCC GAAATCAATC TACCCAGCGG TACATGGCAA
CTGGCCGCGC TGCCGCGAGG CGGCTGGCCG ACCAGGGCGG ACAATGTCTG GCTGTTACGT
CTGGGCATGG CTGTCGTAGC GTTGCTGGTG CTGGGGGCTT TTCTGGTGCT CTGGCGGGCC
TTGAACCAGG CCTCGCAGGC TTGGGCACGC GCCGAATCTT CCGGGCGGCA ACTTTCGGCG
ACGTTGGAGA ATACGCCGGA TGTGGCTGTC CAGTGGTACG ACTTGCAGGG CCGGGTGATC
TATTGGAATC ATGCCTCGGA GCAACTTTAT GGCTGGTCTG CCGAGGAGGC GATTGGCCAG
CGACTGGATC GGCTGATTTT TGACCGGGAG CAGACTGACA ATTTCACGCG CCTGCTGGAC
GAGGTGGCTG CGAGCGGAAA GCCCATCGGT CCGGCAGAAT ATTCAATCCG GACCCGTGAT
GACGAACTGC GCTGGGTCGA GGCGACGATG TTTTCCATCC CCGGGGAAAG CCCTGAAAAA
CCGATCCTCG TCTGCATGGA TGTCGACATT ACCGACCGCA AGCAGGCTGA GAAGGAGCTG
GCGGATTTCA ACCGGGACTT CGAGGCATTC CTGAATCAGA CCACAGATTT TGTGTATTTC
AAGGATGCCA AGGGCTGTTT CCGTTTTTGC AGCCAGGCCA TGGCCGAGAT TTCCGGACAT
GCCAGCTGGC GCGAAATGAT CGGCAAGCAC GACCGGGAAA TTTTTCCGCC GGATACGGCA
CGGGTCTATC AGGAGGAGGA ATACCGGGTC CTCACTGAAG GCCGCCCCTT GCTGAACAAG
ATCGAGCCGT ACTACGACGC CGACGGTCAG CGCGGCTATG TGCAGACTTA CAAGTGGCCA
TTATTTGACG AGCAAAAACG GGTCGTCGGA CTTTTCGGCG TCAGCCGGGA TATTTCCGAG
CAGGTTCGCA ACGAAGAAGA ACTGGCGCAG CACCGCCTGC ATCTGGAAGA ACTCGTTGCC
GAGCGCACCG AGGAGCTGGC TGTCGCGAAA GAGTCTGCCG AGGCTGCCAA CGTGGCGAAG
AGTGAATTTC TGGCCAACAT GTCACACGAG ATACGTACCC CGCTCAATGC GATTTCTGGC
ATGGCGCATC TGATCAGGCG TGGTGGCCTG GCGCCCGAAC AGATGGAACG GCTCGACCGG
TTGGAACTGG CCAGCGAGCA TCTGCTGGAA ACCATCAACG CCATTCTCGA CCTGTCCAAG
ATCGAGGCCG GAAAGTTCTC GCTTGAGGAG GCGCCACTGC GGGTGGCGGG CATTCTTGAT
AACGTCACAG CCATTCTCCA GGATCGCGCC CAGGCAAAGC ATCTGCAACT TTCGGTCGAG
AGCGACCCAA CGCTACCCCC TTTGCTCGGA GACCCGGTTC ATTTGCAGCA AGCCTTGCTG
AACTACATGT CCAATGCCAT CAAGTTCACC GAATCCGGCC GTATTACCTT GCGGGCCAGG
CGAGTCGATG AGGATGCCGA CAGCCTGCTC CTGCGCTTCG AGGTTGAGGA TACGGGAATC
GGCATTGCTC CCGAGCACTT GCCCAGGCTT TTCTCTGCCT TCGAGCAGGC CGACAACTCG
ATCACCCGCC GCTATGGCGG CACAGGCCTG GGGCTGGCGA TTACCCGGAA GATCGCCCGT
TTGGTTGGGG GGGATGCCGG TGCCAGCAGC GTGCTGGGGC AGGGGAGTAC TTTCTGGCTG
ACCGCCCGCT TGAAGAAAGG GGCAGCGGGC GATGCGGCGG CAGGCATTGA ATTGCTCGAT
GGTGCCGGTG AAGTTCTGAG AGGAGATTAT CGGGGCTGCC GCATCCTGCT GGTCGAGGAT
GAGCCGATTA ATCAGGAGAT CGCGCTGGCC ATGCTGGACG ATGTCGGCCT GATCGCCGAT
GTGGCGGAAG ATGGTGTCGT GGCCATCGCA ATGCTTGACC GGAATGACTA TGACCTGATC
CTGATGGATA TGCAGATGCC GAGAATGGAT GGCCTGACGG CAACCCGGAA GATTCGCGAG
CAGGCTGGCA AGGCCGGGAT TGTCATTCTG GCCATGACGG CAAATGCCTT TGCCGAGGAT
AAAGTGCGCT GCCTTGAGGT AGGCATGAAC GATTTCATCG CCAAGCCGGT CGATCCCGGC
CATCTGTACG CGATGCTGGT CAAGTGGCTG AGCAAGTCGC CCGCCTGA
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| Protein sequence | MRRGVFNTVM ALLVCGMALA AYVGERINDE RYIGAVRGEV QQNLIRTRDR LDSNLNSDIQ
LVRGLVGVIA LEPDLVQARF ERAVQPLFAG RTQLRSIAVA PDMMIRLIYP TQGNQKAIGF
DYRKSPGQFE AADRARLTRQ IVLAGPLSLV QGGVGIVARL PVFLPDGEGQ ERFWGIVSAV
VDAELLYRNS GLRDDNSPIE IAIRGTDGKG SEGGVFFGRP ALFAESPVLA EINLPSGTWQ
LAALPRGGWP TRADNVWLLR LGMAVVALLV LGAFLVLWRA LNQASQAWAR AESSGRQLSA
TLENTPDVAV QWYDLQGRVI YWNHASEQLY GWSAEEAIGQ RLDRLIFDRE QTDNFTRLLD
EVAASGKPIG PAEYSIRTRD DELRWVEATM FSIPGESPEK PILVCMDVDI TDRKQAEKEL
ADFNRDFEAF LNQTTDFVYF KDAKGCFRFC SQAMAEISGH ASWREMIGKH DREIFPPDTA
RVYQEEEYRV LTEGRPLLNK IEPYYDADGQ RGYVQTYKWP LFDEQKRVVG LFGVSRDISE
QVRNEEELAQ HRLHLEELVA ERTEELAVAK ESAEAANVAK SEFLANMSHE IRTPLNAISG
MAHLIRRGGL APEQMERLDR LELASEHLLE TINAILDLSK IEAGKFSLEE APLRVAGILD
NVTAILQDRA QAKHLQLSVE SDPTLPPLLG DPVHLQQALL NYMSNAIKFT ESGRITLRAR
RVDEDADSLL LRFEVEDTGI GIAPEHLPRL FSAFEQADNS ITRRYGGTGL GLAITRKIAR
LVGGDAGASS VLGQGSTFWL TARLKKGAAG DAAAGIELLD GAGEVLRGDY RGCRILLVED
EPINQEIALA MLDDVGLIAD VAEDGVVAIA MLDRNDYDLI LMDMQMPRMD GLTATRKIRE
QAGKAGIVIL AMTANAFAED KVRCLEVGMN DFIAKPVDPG HLYAMLVKWL SKSPA
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