Gene Daro_2841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_2841 
Symbol 
ID3566403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp3055420 
End bp3057564 
Gene Length2145 bp 
Protein Length714 aa 
Translation table11 
GC content61% 
IMG OID637681310 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_286041 
Protein GI71908454 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.0729826 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.310526 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCGCA AACACTTCAT ACCACGCGTG TCTGATGGGT GGAATTTTGT TCAGTCGGGT 
AGCAGCCACG GCTCCGCCTT GCTGCAGGCG CCAGCCATGG CGACCTTGTT TTCCAAGCTC
GATGGCATGC TGTTCCGCTG CCTGCTTGAT GAGTACTGGA CACTGTTGTC GGTCAGTCCC
GGCTGTCATG AACTGACCGG ATTTCGGGCC GATGATCTGG TTGGCAAGCA GCAGAATTCG
CTTGAGTCAC TGGCCCATCC GGAGGACCGG GCGGCGGTTC GCGGCACAAT CCTGGCGGCG
CTGGAGACTG GCTCGCGCTA TAGCATTGAG TACCGCATCG TCTGCCGGGA TGGTGAGGAG
AAATGGGTAC AGGAGCGCGG CGTTGGTTTG CGCGACGAGG CTGGTCGCCA GGTACTGGAA
GGCTATCTGG AAGACATTAC GGATCGCGTC CAGGCCCAGA TCCAGTTAAC AGAAACGGAG
CTGCGCTATC GCAGCATTTT TGAAAATTCG GTGGTCGGCA TGTTTCAGAG CACCGAGAGC
GGTCGTTATT TGGCGGCCAA TCCGGCCCTG GCCAGGCTTT ATGGGTATTC GACGCCGGAG
GCGCTGATCA GCAGTCTGGC CGATATTGCC AGTGGGCTGT ATGTCGATCC GCAGCGGCGC
GAGGATTTCA AGCAGTTGAT CCAGCGCGAT GGCCGGGTCA CCAATTTCGA GTCGGAGATC
ACCTGTCGCG ATGGCAGCCG GATCTGGATC GCCGAGCATG CCCATGCCGT TCGATCGGCC
GACGGGTCTT TTCTCTATTA CGAGGGAACG GTCGAGGATA TTACCGAGCG CCATCGTTAC
CAGTCGGTGC TGCAGCACCA GGCAACGCAT GATCCACTGA CCGGGTTGCC CAACCGCAAC
CTGCTGGAGG ACCGCCTGGC CCAGGCAGTG CAACTGGCAC GGCGCAAGAG CAGCAAGGTG
GCACTGGCCT TTGTCGATCT CGATAACTTC AAGGTGATCA ACGACAGCCT CGGTCATGCC
GCCGGCGATC AGTTGCTGAT TGAAATCTCC AGTCGTTTGC GCGCCGCCTT GCGCGGCCTT
GATACCGTGG CCCGCTACGG TGGCGACGAG TTCGTGCTGA TCCTCGGCGA ACAGACCTCC
ATGGCCGACA CCATGCACCT GCTTGAGCGC GTGCTGGTCA GCATTCAGGC ACCGCTGGCG
CTGGAAGGGC ACGGCCTGCG CATCAACTGC AGCATCGGCG TCAGCGTCTT TCCCGACGAT
GCGCAGGATC TCGACGGCCT GTTGCGGGTG GCCGATGTCG CGATGTATCA CGCCAAGGAA
AGTGGCAAGG GGCAGTACTG TTTCTATACC CGCGATCTGA ACCAGGCCGC TCAGGATCGG
TTTTCGCTGG AAACAGCGCT CGGCAGCGCC ATCGAAAACA ATGAACTGAC TGTCGTCTAC
CAGCCGAAGG TGGATGGCGA GGGCATGGTC CGCGGTTTTG AGGCGCTGGT CCGCTGGAAT
AGCGCCGGCC GGGGGCTGGT CACACCCGAC CGCTTCATTC CGCTGGCTGA GGAAACCGGG
CAGATTCTGG CGATCGGTGA GCAGGTGCTG TATGCCGCCT GCCGGACGGC CGCCAACTGG
CCGCTAATCG ATGGCCAGGC CTTGAGTGTG GCCGTTAACC TCTCGGCACG ACAGTTGCGC
GAACCCGGTT TGCCGGGGTT GGTGGCCGAT GCACTGGCGG TTTCCGGCCT GCCGCCGGAA
TGCCTGGAAC TTGAAGTCAC CGAGAGCATG ATCATGGGCG ACATGGAGCA CAACATCCGG
GTGCTCAAGT CGATCAAGGC GCTCGGCGTG CGCATCGCGG TCGATGACTT CGGCACCGGC
TATTCGTCGC TGGCCTATCT GCAGCGGCTG CCGATCGATA CGCTGAAGAT CGACCGTTCC
TTCGTTTCCG GCTGCAACCG TGGTGGCAAG GCGATGGCAA TCCCGCATGC CATCATTTTC
CTCGGCAAGA CGCTGGATCT GCATATTGTC GCCGAAGGGG TCGAAACCGA CGAGGAACGG
GCGATTCTGG CAGTTTGCGG CTGCAACGAG TTCCAGGGCT ACCTGTTTTC CCGGCCGCTG
CAGAGTGCGG CAGTCGATAC CTATTTGCAG GCAAAAATCG GCTGA
 
Protein sequence
MFRKHFIPRV SDGWNFVQSG SSHGSALLQA PAMATLFSKL DGMLFRCLLD EYWTLLSVSP 
GCHELTGFRA DDLVGKQQNS LESLAHPEDR AAVRGTILAA LETGSRYSIE YRIVCRDGEE
KWVQERGVGL RDEAGRQVLE GYLEDITDRV QAQIQLTETE LRYRSIFENS VVGMFQSTES
GRYLAANPAL ARLYGYSTPE ALISSLADIA SGLYVDPQRR EDFKQLIQRD GRVTNFESEI
TCRDGSRIWI AEHAHAVRSA DGSFLYYEGT VEDITERHRY QSVLQHQATH DPLTGLPNRN
LLEDRLAQAV QLARRKSSKV ALAFVDLDNF KVINDSLGHA AGDQLLIEIS SRLRAALRGL
DTVARYGGDE FVLILGEQTS MADTMHLLER VLVSIQAPLA LEGHGLRINC SIGVSVFPDD
AQDLDGLLRV ADVAMYHAKE SGKGQYCFYT RDLNQAAQDR FSLETALGSA IENNELTVVY
QPKVDGEGMV RGFEALVRWN SAGRGLVTPD RFIPLAEETG QILAIGEQVL YAACRTAANW
PLIDGQALSV AVNLSARQLR EPGLPGLVAD ALAVSGLPPE CLELEVTESM IMGDMEHNIR
VLKSIKALGV RIAVDDFGTG YSSLAYLQRL PIDTLKIDRS FVSGCNRGGK AMAIPHAIIF
LGKTLDLHIV AEGVETDEER AILAVCGCNE FQGYLFSRPL QSAAVDTYLQ AKIG