| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2811 |
|---|
| Symbol | |
|---|
| ID | 3566563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3017686 |
|---|
| End bp | 3020757 |
|---|
| Gene Length | 3072 bp |
|---|
| Protein Length | 1023 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637681280 |
|---|
| Product | PAS |
|---|
| Protein accession | YP_286011 |
|---|
| Protein GI | 71908424 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0211559 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGTTCG ATAACAAATA CCCTGCGTTT TCAAGCAGAC TTCTGCTGAC CGTGGTGCTT
TTTCTGGCGC TGCTCATTGC CTTTGGCGCC TACGTCAGAG CCGAAAAGGA AATCGATCGC
GCCAACGAAT TACGCCATCA ATCCTTACAG CTGGCGGCCG AATTAAGGCA GTCGTCGGAT
GATCTGACCC GGATGGCGCG CACGTACGTG GCGACTGGCC AGCCGGTTTA CAAGAAGTAT
TACCAGGACA TCCTCGATAT TCGCGATGGC AGGAAGGCCC GCCCGGAAGG GTATCGCGGA
GTCTATTGGG ATCTGGTGCT GGGCGGACAA CGTCAGCCCC CGGCCGACAG CGGGAAGGGC
GTCGAACTGC TGGCCTTGAT GCGCCAGGCC CAATTTTCTG ACGACGAATT TCAGAAGCTT
GCGGCAGCCA AGGCTCATTC AGATCGGCTG GCCACCATAG AACTTGAGGC GATGCGCTTG
TACGAAGCAG ATTCGCCCGA CCACCAGGCC AATCAGGAGA AGGCCCGCCT GGTGATGCAC
GACGATGCCT ATCATCGGAG CAAGATGGAA ATCATGCAGC CGATTGGTCA GGTCTATGAG
CTGGCTGACC AACGTACAGC GCAGGCCGTA CGGGCTTCCG AAGAGAATGC TTTTTTCTTG
CGCAGCTTGT TCATGGCCTT TGGTCTGGCA GCGATTTTCA TGCTCTGGCG GACCTACATG
GCACTGCGCA AAACCCTGGG GGGGTCGGCT GACGATGTGC GCTCATTGAT TGTCCGCCTG
GGGCAGGGCG ATTTTTCGAT GGATACCGCT CCTGAGGCCG GTACGGAAAA CTCCGTGATT
GGCTGGTTGA AGGAGACCTC CAGAAAACTG AACGACATGG CGGCGACAAC CCAGCAGTCG
GAGCAGCAGC TGGCGCAGCG GACGCGCGAG TTAATGCTGA ACAACCGGAT CTTGAAGCGA
ATTTCTCAAG GCGGCAGCCT GACCGAGACT CTGGAAAATC TGGCTCGCGA TGTCGAAAGC
CTGCATCCGG GCATGCTCTG CTCGATCCTG CTGCTTGATG AGGACGGTCT GCACCTGCGC
CACGGCGCTG CGCCCAGTCT GGCGGACTTC TATTGCCAGG CGATTGATGG TGTGGCCATC
GGCGAAGGGG TTGGCTCATG CGGCACCGCA GCTTTCATCG GCGAACGTGT CATTGTCGAA
GACATCCAGC GACATGAATA CTGGAGGGAC TATGTCGAAC TGGCCCGACG GGCCGATCTG
GGATCCTGCT GGTCACAGCC ATTCAAAAAT CGGGAAGGGC GTGTCCTCGG GACGTTTGCC
ATTTACCACC GACAGCCCAC CCAGCCCTCT GCGGCGGAAA TCGCCCTGAT TGAAGATTAC
GCCAGCCTGG CCGAGCTGGC TGTCGAGAGC GCCCAGACAG AATCCGCACT GGAAAAAAGT
CGGGAGCTTT ACCGTTTGAT CGTCGATAAC AGCAACGACG TGATCTGGCT AATGGCGTTA
CCGGCCATGA AATTTACCTA TGTCAGCCCC TCTGTTCTGC GCATGCGGGG CTGGACGGCC
GAAGAAATCA TGGCCCAGCC GCTTGAAGCG GCCTCTACAC CGGAGTCGAC ACTGCTCATC
AAGGCACAGC TCAAGAAAAA TCTTGAACTG CTGAGAGCGG GCGACATGCG CGGTAGATTC
GCCACCACCG AAGTGGATCA GCCCTGCAAG GACGGCCGGA TAATCCATAC CGAGGTGGTC
ACCACGCTGT TGCTCGATGA AAGCGGCCAA CCCTCTCAGA TTCTCGGTGT CACGCGAGAT
GTGACCGAGC GTAAACGCGC TGAGGCGGAA CTTGAACAAT ACCGTCATCA TCTGGAAAAA
ATGGTTGAAG ATCGCACGGC AGCGCTGTCC GACGCCAAGG AGGCGGCCGA AGCCGCGAAT
CGGGCGAAGA GTACTTTCCT GGCCAACATG AGCCATGAAT TGCGCACGCC GATGAACGCC
ATCATGGGCA TGACGGATCT GGTTCTAAGG CGATCCACCG ACGATCGACA GCGGGAGCAG
TTGTCAAAAG TGGTGCAGGC ATCCCGCCAT TTGATGGCCG TTATCAACGA CATTCTCGAC
CTTTCCAAGA TTGAGGCAGA GCGCCTGACG CTGGAAAAGA TTCCGTTCCG GCTGACGGAG
ATTTTCGACA ACCTGAAGAA CCTGGTCGGC GAGCGGGTGG CTGAAAAGGG GCTGCTGCTG
AAAATTTCCA AGGCGCCGGA ACTGAGCAAT ATGGTATTTC GCGGTGATCC GCTACGTTTG
GGCCAGATAT TGCTCAATCT GACCGGGAAT GCCGTGAAAT TCACCGCCGA GGGCTCGATT
GCCCTGAGCG TCTCGGTTGT CGAAGATCAT CCTCACGATG TCGTCTTGCG CTTTGAGGTG
TGCGATACCG GCATCGGGAT CGCTGCCGTC GATCAGGGGA GATTGTTCAC CGCCTTTGAA
CAGGCGGATG GATCAACGAC CAGAGAATAT GGCGGTAGCG GTCTGGGCCT GGCGATCAGT
CGGCGTTTGG CCAAATTGAT GGGCGGCAAT ATCGGCGTCG AAAGCACGCC GGGCGTCGGC
AGCACCTTCT GGTTTACGGC AAGGCTCGAC AAGGCCGGGC CGCTGGCCGG CGTGGCTGCC
GGGCCATCCC CGGAAATGGC CGAAGCGGCG ATCAGGTCTC ACCATGCCGG GTCTCGGGTT
CTGCTCGTTG AGGACGAGCC GATCAATCAA GAGGTTGCGA CCGAAATGTT GAAGGAGATC
GGGCTGGTTG TCGATCTGGC CACTGATGGC GAGCAAGCAC TCGACATGGT CCAGCGCACC
GGCTATGACC TGATACTGAT GGACCTGCAG ATGCCAAAAA TGAACGGGAT TGAGGCGACC
CAGGCGATTC GCCAACTGCC GGCGGGTGCG GAGGTACCGA TCGTGGCCAT GACGGCCAAC
GCCTTTACCG AAGATCGGCA GCGCTGCCTG GATGCAGGAA TGAATGACCA CATCGGCAAA
CCGGTGGACC CGGAATTGTT GTTCGAAATC CTGCTCAAGT GGCTGGGTAG GGGACATGGT
GACCGGCGCT GA
|
|---|
| Protein sequence | MTFDNKYPAF SSRLLLTVVL FLALLIAFGA YVRAEKEIDR ANELRHQSLQ LAAELRQSSD
DLTRMARTYV ATGQPVYKKY YQDILDIRDG RKARPEGYRG VYWDLVLGGQ RQPPADSGKG
VELLALMRQA QFSDDEFQKL AAAKAHSDRL ATIELEAMRL YEADSPDHQA NQEKARLVMH
DDAYHRSKME IMQPIGQVYE LADQRTAQAV RASEENAFFL RSLFMAFGLA AIFMLWRTYM
ALRKTLGGSA DDVRSLIVRL GQGDFSMDTA PEAGTENSVI GWLKETSRKL NDMAATTQQS
EQQLAQRTRE LMLNNRILKR ISQGGSLTET LENLARDVES LHPGMLCSIL LLDEDGLHLR
HGAAPSLADF YCQAIDGVAI GEGVGSCGTA AFIGERVIVE DIQRHEYWRD YVELARRADL
GSCWSQPFKN REGRVLGTFA IYHRQPTQPS AAEIALIEDY ASLAELAVES AQTESALEKS
RELYRLIVDN SNDVIWLMAL PAMKFTYVSP SVLRMRGWTA EEIMAQPLEA ASTPESTLLI
KAQLKKNLEL LRAGDMRGRF ATTEVDQPCK DGRIIHTEVV TTLLLDESGQ PSQILGVTRD
VTERKRAEAE LEQYRHHLEK MVEDRTAALS DAKEAAEAAN RAKSTFLANM SHELRTPMNA
IMGMTDLVLR RSTDDRQREQ LSKVVQASRH LMAVINDILD LSKIEAERLT LEKIPFRLTE
IFDNLKNLVG ERVAEKGLLL KISKAPELSN MVFRGDPLRL GQILLNLTGN AVKFTAEGSI
ALSVSVVEDH PHDVVLRFEV CDTGIGIAAV DQGRLFTAFE QADGSTTREY GGSGLGLAIS
RRLAKLMGGN IGVESTPGVG STFWFTARLD KAGPLAGVAA GPSPEMAEAA IRSHHAGSRV
LLVEDEPINQ EVATEMLKEI GLVVDLATDG EQALDMVQRT GYDLILMDLQ MPKMNGIEAT
QAIRQLPAGA EVPIVAMTAN AFTEDRQRCL DAGMNDHIGK PVDPELLFEI LLKWLGRGHG
DRR
|
|---|
| |