| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2787 |
|---|
| Symbol | |
|---|
| ID | 3566732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2991543 |
|---|
| End bp | 2994272 |
|---|
| Gene Length | 2730 bp |
|---|
| Protein Length | 909 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637681256 |
|---|
| Product | Hpt sensor hybrid histidine kinase |
|---|
| Protein accession | YP_285987 |
|---|
| Protein GI | 71908400 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0319908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTG ACAACCTGCC CATCCGCCGG CGGCTTGCGA TGATTATCGC GGTCTCGCTG
GGTATCAGCC TGTTGCTGAC CTCGCTGTTT TTCGCCATCC GCCAGATCGA CCATCGACGC
GACGCAAAAT TAACCGAACT GCGCTCAATG GCCGAAGTGA TCGCCTTCAA CGCGACAGCC
GTGGTCGAGT TCCAGGATAT CGCCGGAGCC GAGCGCCTAT TCAGTTCCCT TGCCCAGCAC
CCCGATCTTG TCCTGGCTCG CATGCGGGGC ACGGACAACG GTTTCAACTT TCGCTATCAA
CGCCCCGACT CGCTGCAGCC CGACGCCAAA CATGTTGGCC CGGCGATTGT TTTCCAAGCC
AGCAGCATTG TCGACTGGAC GCATGTCACG ACCATTGTCC CGATCCGGAT CAGGAGCGAT
GTGATCGGTT CGGTCGCCAT GACCGCCAGC CTGGAGAAAG TCTGGCGCGA TGCACTCAGC
GATTTCATGA CCTTCATCGT CGCCTCACTG GTCGCCTTCG CCCTCGCACT GCTCATTGCC
CAGCGCATGC AGCACTCGTT GCTAAAGGCA CTTGGCGCGC TGACCAGCAC GGCAAATCGC
GTGGCCGAAT CGAAAGACTT CACGGAGCGG GCCAGCAAGT ATTCGAACGA CGAAATCGGC
CAGCTCGCCG ATGCGTTCAA TACGATGCTG ATCGAAATCG CCGATCGTGA CCATGAACTG
ACCGAGTACC GCGATCACCT CGAAGATGTC GTTCAGTTGC GCACTCAGGA ACTCCGCCTA
GCCAAGGACA ACGCAGAACA AGCCAACCGC GCCAAGAGTG CCTTCCTGGC CAACATGAGC
CATGAAATCC GCACCCCGAT GAACGGCATC ATCGGGGTCG CCGATCTGCT CGCGGCCGGC
TCTCTGAACG CGCACCAGCA GAACCAGTTA ACCACGCTGC GCAGTTCGGC CGATACCCTG
CTTTACCTGC TGAACGACAT TCTCGATTTC TCGCGCATCG AAGCCGGCGG GCTCCAGCTG
GAAAAACTGC CCTTCAGCAT CCGCGAAACC ATAGAGCAGG TCATCTCGGT CTTTTCGCCG
ACCGCCCGCA AAAGACACCT CGATCTGTGG TTCGACATCG AACCTTCACT GCCGGACTAT
ATTGTTGGCG ACAGGTATCG ATTAGGCCAG GTCATTACCA ATCTGCTGAA CAATGCCCTG
AAATTCACCG AATCCGGCAG CGTGCGCATT TCCTGCCGTT CGCAACAGGA CAAGAATGGC
CAGAACCGTC TGCTGATCGA AATCACGGAC ACCGGCATTG GCATCATCGC CCAGGCACTC
GCCGACATCT TCTCTCCGTT CCGCCAGGCC GATAACAGCA TGAGCCGGCG TTTCGGCGGC
AGCGGCCTCG GCCTCGCCAT CGTGCACGAC CTGGTCGCCC TGATGGAGGG TGAAATTACC
GCGAAAAGCA CCCCCGGAAG GGGCTCGACG TTCAGTATCG ACTTGCCGCT CGAATGTGCT
CACAGTTTTG GCCGCAATTT GCCGGACTGG ATGCCAAAAT TGCGTGGCCG CCAGGTGCTG
GTCATCTCTG CCAACGAAGC GCGCAGCAAT CACTGGCAAG CCATGTTGCG CTGGGCTGGT
ATCGACACCC TCTCGGCGCC ATGCTGGAAC GAGGCTCAGA CCATACTGGA ATCAGCCAAG
CCTGACGCAA TCATCGTCGA AGATAGCCCA AGCTTCCGCA GCAGACTTGA ACAATCGGAC
TCCGCCCCCC CCTTCCCGGT CCTGTTTGTC TTTAATCTGG AAACGCCGAG CGAGCAGACA
GTAGAGCTAC CCGAATGGAT CACGGGCCAA CTACACACAC CGTTTGGTGA CCTCACCCTG
TGGACTGAAC TGGCCAAACT CTGGGGCTTG GTCACTGAAA CCTTGAAGGA ACCCGAAGCA
TCCGGCAACC TGCATTTCAA CGCTCATGTC CTGATGGTGG AAGACAATGA CACCAACCGC
CTGATCCTTG AACAGATCCT GAGCACGCTG GGCTGCACTG TACGGCATGC CAACAACGGC
CAGGCAGCCC TGGCAGCCCT CGAAGTCGAG CCATTCGACC TCGTGCTGAT GGATGTCCAG
ATGCCGATCA TGGACGGCCT GACGGCGACA CGCCGGATAC GGGAAGCGGA AAAGGAGCGT
CACCAGCCTC GCCAGTTGAT TATTGCGCTG ACCGCCAACG CCCTGGCGGG GGACCGTGAG
ATGTGTCTGC AAGCCGGCAT GGACGATTAT GTGACCAAGC CAGTCACCAT TGGGGGGCTC
AGCAAGGCGT TCCAGCGCTG GCTGCCATCC TCGCCCGCTG AACCTCAGGC GCTTGCCGCC
CTTTCAGGCA AACGGGACAA TGCCGCGACC ATGACCGTCA TCGATCTGAG CGACCTGCGA
GCCAGCCTGG GCGAGCAAGC CCACCAGATC ATCCCGGCGG TCATCAAGTC TTACCTGAGC
GAAGGTGAAA GACACGTTGA GGTGCTGAAG GCCGCGGACC GGGAATTCAA TCTCGAACAT
GTCACTCGGA TCGTGCACAA CCTGAAGAGT TCGAGCGCCG CGCTGGGCAT CAAGCAATTT
TCTGAACTGT GCAAGGAAGC GGAAAAACTG CTGCGGGGCA GCCAGATCGA AACAGGCAAG
GCATTGCTGC CCCGTATCGT CAAGGCCTTT GAAGAAGTCC GTCTGACCGC TGAAACGACG
CTCGCCGAAA TGGCCAGAGA CAAATCATGA
|
|---|
| Protein sequence | MNIDNLPIRR RLAMIIAVSL GISLLLTSLF FAIRQIDHRR DAKLTELRSM AEVIAFNATA
VVEFQDIAGA ERLFSSLAQH PDLVLARMRG TDNGFNFRYQ RPDSLQPDAK HVGPAIVFQA
SSIVDWTHVT TIVPIRIRSD VIGSVAMTAS LEKVWRDALS DFMTFIVASL VAFALALLIA
QRMQHSLLKA LGALTSTANR VAESKDFTER ASKYSNDEIG QLADAFNTML IEIADRDHEL
TEYRDHLEDV VQLRTQELRL AKDNAEQANR AKSAFLANMS HEIRTPMNGI IGVADLLAAG
SLNAHQQNQL TTLRSSADTL LYLLNDILDF SRIEAGGLQL EKLPFSIRET IEQVISVFSP
TARKRHLDLW FDIEPSLPDY IVGDRYRLGQ VITNLLNNAL KFTESGSVRI SCRSQQDKNG
QNRLLIEITD TGIGIIAQAL ADIFSPFRQA DNSMSRRFGG SGLGLAIVHD LVALMEGEIT
AKSTPGRGST FSIDLPLECA HSFGRNLPDW MPKLRGRQVL VISANEARSN HWQAMLRWAG
IDTLSAPCWN EAQTILESAK PDAIIVEDSP SFRSRLEQSD SAPPFPVLFV FNLETPSEQT
VELPEWITGQ LHTPFGDLTL WTELAKLWGL VTETLKEPEA SGNLHFNAHV LMVEDNDTNR
LILEQILSTL GCTVRHANNG QAALAALEVE PFDLVLMDVQ MPIMDGLTAT RRIREAEKER
HQPRQLIIAL TANALAGDRE MCLQAGMDDY VTKPVTIGGL SKAFQRWLPS SPAEPQALAA
LSGKRDNAAT MTVIDLSDLR ASLGEQAHQI IPAVIKSYLS EGERHVEVLK AADREFNLEH
VTRIVHNLKS SSAALGIKQF SELCKEAEKL LRGSQIETGK ALLPRIVKAF EEVRLTAETT
LAEMARDKS
|
|---|
| |