| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2730 |
|---|
| Symbol | prfC |
|---|
| ID | 3566879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 2925140 |
|---|
| End bp | 2926714 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637681197 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_285930 |
|---|
| Protein GI | 71908343 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 0.426753 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.414685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTCCCC TCGACAACGA AATCTCCCGC CGTCGCACTT TCGCGATCAT TTCCCACCCC
GACGCCGGTA AAACGACGCT GACCGAAAAG CTGCTGTGGT TCGGCGGCGC CATTCAGGTG
GCCGGCGAAG TTCGCGCCCG CAAGGCATCC CGCCACGCGA CCTCGGACTG GATGGAGCTG
GAAAAGCAGC GCGGCATTTC GGTGACTTCG TCGGTGATGC AGTTCCCCTA CCGCGAATGC
ATGATCAACC TGCTCGACAC GCCGGGCCAC GAGGACTTCT CGGAAGATAC CTACCGCACG
CTGACCGCCG TCGACTCGGC CGTCATGGTC ATCGACTCGG TCAACGGTGT CGAGGCGCAG
ACGATCAAGC TGCTGAACGT CTGCCGCATG CGCGACACAC CGATCCTGAC CTTCATCAAC
AAGCTCGACC GCGAAGGCAA GGAGCCGATC GACCTGCTCG ACGAAATCGA GTCGGTGCTC
GGCATCCAGT GCGCGCCGAT GACCTGGCCA ATCGGCATGG GCAAGCGTTT CCGCGGCGTC
TATCACCTCT ACGACGATGC CATTGCCTTC TTTGATCCGC AGGCCGAGAA GGGTACGGCC
GAGATCATCC AGGGCCTCGA CAATCCGCGC CTCGATGAGT TGATTGGAAC GCAGGCCGAC
GAGTTGCGCA TGGATATCGA ACTGGTCCGC GGCGCTTCGC ACGCGTTCGA TGCCGAAGCC
TATCTCTCGG GCAAGCAGTC GCCGGTCTTC TTCGGCTCGG CGGTCAACAA CTTCGGTGTG
CAGAGCCTGC TCGACGCTGT GGTCGACCTG TCGCCGCCGC CGATTGCCCG TCCTTCGGTC
AGCCGCGAGG TGTTGCCGAA CGAGCCGAAG TTCTCCGGTT TCGTATTCAA GATTCAGGCC
AACATGGACC CCAAGCACCG GGACCGTATC GCCTTCCTGC GCGTCTGTTC CGGCCGCTTT
GACAGGGGTA TGAAGGTCAA GCAGGTGGCT TCCGGCAAGA TGCTGTCAAT CAACAATGCC
ATTACCTTCA TGGCCCGCGA CCGTTCCACG ACCGACGAGG CCTGGCCGGG CGACATCATC
GGTATTCCGA ACCACGGCAC GATCCGCCTG GGCGAAACCT TTACCGAAGG CGAAGATCTG
CGCTTTACCG GCATCCCGTC CTTCGCGCCC GAGCATTTCC GTCTGGCCCG CATCGCCAAC
CCGCTGAAGA TCAAGCAATT GCAAAAGGGC TTGCAGCAGC TGGCGGAAGA GGGCGCCACC
CAGTTGTTCC GGCCGCTGTC CGGTACCGAC CTGATCCTTG GGGCGGTCGG TACGCTGCAG
TTCGACGTGG TGGCCAGTCG TCTGGAAAAT GAATACGGCG TGCAGGTCAT CTTCGAGCAC
TACAACTGCG CGACGGCGCG CTGGATTCAC GGTGATGCCG CCGAGTTGCG CCAGTTGTCC
GACCGCTACA GTGCCAACGT CGCGTTGGAT GGGGCTGACG ACCCGGTCTA TCTGGCACCG
AACAATGTCT ATCTGAACAT GGTCAAAGAG AAGTACCCCA ACCTGCGCTT CCTCGAAGCG
CGCGAAGTGG CGTAA
|
|---|
| Protein sequence | MTPLDNEISR RRTFAIISHP DAGKTTLTEK LLWFGGAIQV AGEVRARKAS RHATSDWMEL
EKQRGISVTS SVMQFPYREC MINLLDTPGH EDFSEDTYRT LTAVDSAVMV IDSVNGVEAQ
TIKLLNVCRM RDTPILTFIN KLDREGKEPI DLLDEIESVL GIQCAPMTWP IGMGKRFRGV
YHLYDDAIAF FDPQAEKGTA EIIQGLDNPR LDELIGTQAD ELRMDIELVR GASHAFDAEA
YLSGKQSPVF FGSAVNNFGV QSLLDAVVDL SPPPIARPSV SREVLPNEPK FSGFVFKIQA
NMDPKHRDRI AFLRVCSGRF DRGMKVKQVA SGKMLSINNA ITFMARDRST TDEAWPGDII
GIPNHGTIRL GETFTEGEDL RFTGIPSFAP EHFRLARIAN PLKIKQLQKG LQQLAEEGAT
QLFRPLSGTD LILGAVGTLQ FDVVASRLEN EYGVQVIFEH YNCATARWIH GDAAELRQLS
DRYSANVALD GADDPVYLAP NNVYLNMVKE KYPNLRFLEA REVA
|
|---|
| |