| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2715 |
|---|
| Symbol | |
|---|
| ID | 3566923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2908594 |
|---|
| End bp | 2909655 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637681182 |
|---|
| Product | tRNA 2-selenouridine synthase |
|---|
| Protein accession | YP_285915 |
|---|
| Protein GI | 71908328 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2603] Predicted ATPase |
|---|
| TIGRFAM ID | [TIGR03167] tRNA 2-selenouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00370816 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCA ACCGTCCCAC CGTGGCCGAT CTCGCGAGCT ACGACGAAAT CATCGACGTC
CGCTCCCCGG CCGAATTTGC TGAAGACCAT ATCCCCGGCG CCATCAATTG CCCGGTCCTC
GACGATGCAC AGCGTATCCA GGTTGGCACG CTCTACAAAC AGGTTTCACC GTTCGAGGCC
AAGAAAATCG GTGCGGCGCT GGTTTCCGAA AACATTGCCA AACACCTCAA GGAACGCTTT
CTCGATCGCC CGAAAAGCTG GAAACCACTG ATCTACTGCT GGCGCGGCGG TGACCGCAGC
GGTTCGATGA CCACCATCTT CAAAGCTATC GGCTGGCACG CTGGGCAACT GGACGGCGGC
TACAAGGCGT GGCGCAGCCA TGTCATTGCC CAGCTGGTGG AATTGCCGCA GCACTACCGC
TTTATCGTCA TCGGTGGCGC GACCGGCAGC GCCAAGACGC GCATCCTGCA GGCCATCGGC
GAACTCGGTG AACAGGTGCT CGATCTGGAA AACCTGGCCA ATCACAAGGG CTCGGTGCTT
GGGGTCTTGC CAGATTCGCC GCAACCTTCG CAAAAAGGTT TTGAAACCGC TTTGCTTCAG
GCCATGGCCG TACTCGATCC GACTCGCCCG GTCTATGTCG AGGCGGAAAG CCGCAAGATC
GGCAACCTGC ATGTTCCTGA AGCGATGATC GAACGCATCC GCAGCGGCGA GTTTGTCGCC
GTCGATGCCA CGCTCGACGC CCGGGTCGCT TTCCTGCTCA AGGATTATGA TTATTTCCTG
ACCCGGCCGG ACTTCCTGTG CGGCCGCCTG GAGGCACTAC GCACGCTGCA AAGCCGGGAA
ACGCTGAATC GCTGGCAACA GCTGATCCAC GAAGGCAATT GGCCGACACT GGTAGGCGAA
CTGCTCGAAC AGCATTACGA CCCGCTCTAC CAGCGCTCGC AGGATCGCAA CTACACGGGC
ATGCAGAATC CGGGCAGTTT CTCGACCGAC GATCTGTCCG AAGACGGCAT CAAGCGACTG
GCCGCCGCCA TCGTTCAGTC GCAGACGGCG CAGATCGCCT GA
|
|---|
| Protein sequence | MKPNRPTVAD LASYDEIIDV RSPAEFAEDH IPGAINCPVL DDAQRIQVGT LYKQVSPFEA
KKIGAALVSE NIAKHLKERF LDRPKSWKPL IYCWRGGDRS GSMTTIFKAI GWHAGQLDGG
YKAWRSHVIA QLVELPQHYR FIVIGGATGS AKTRILQAIG ELGEQVLDLE NLANHKGSVL
GVLPDSPQPS QKGFETALLQ AMAVLDPTRP VYVEAESRKI GNLHVPEAMI ERIRSGEFVA
VDATLDARVA FLLKDYDYFL TRPDFLCGRL EALRTLQSRE TLNRWQQLIH EGNWPTLVGE
LLEQHYDPLY QRSQDRNYTG MQNPGSFSTD DLSEDGIKRL AAAIVQSQTA QIA
|
|---|
| |