| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2439 |
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| Symbol | |
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| ID | 3568382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 2638062 |
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| End bp | 2640833 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637680905 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_285644 |
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| Protein GI | 71908057 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.427579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA ACCGTTTCTT CATTACGTCA GCTCTCACTA CTGCACTGCT CGCTGCATTC
CTTGGGGGCT GCGGCGACTC CCCTGAATCG CTCATCGCCT CAAGCCGAGA GTTTCTCGCC
AAGAATGACA ATAAGGCGGC TGTTATTCAG TTAAAAAATG CCCTTCAACA AAATCCCAGT
CTTGGCGAAG CACGCTTTTT GCTCGGGAAA ACGCTTCTTG AGACTGGCGA TGCAGCGGGT
GCGGAAGTTG AGCTCCGCAA GGCCCAAGAT CTGAAATACT CCCCAGAACA AACAACTCCT
CTTCTGGCCA AGGCGATGCT TGGCGCTGGC CAAGCAAAGA AGTTAATCGA CGAATTCGGA
AAAACTGATT CGCTTAGCGG GGAATCTCTT GCTGCGCTCA AGACGACCTT GAGCGTTGCT
TACCTCATCC AAGGCAACCA AGATGCTGCT CAATCAGCAC TTTCCGATGC TCTAAAGGCA
CAACCGGACT TCGCTCCTGC CCTACTTTCC CTGGCTCGTA GCAAAGTCAC AAATCGAGAC
ATTGATGGCG CCCAAGCACT CGTCGCCCAA GTCTTGGAGA AGAACCCAAA AAATCACGAC
GCTTTGCTGT TGAATGGCTC CCTGCAAGGA GTCAAGTCGG GTCCCGAAGC CGCCTTAGCT
GAATATCGCA AGGCAATCGA GGCCAAGCCT GACTTTATTG CCGGGCACGC TGCGCTCATT
ACCACGCTAT TCCAGCAACA GAAATTCGAC GAGGCATCCA CCCAGTTGGA TGCCTTGAGG
AAAATTGCGC CGAAACATCC GCAAACGCTC TATCTGGATG CCCAAGCCAG CTACCAGCGG
AAGGATTTCC AAGGCGCACG CTCAAAACTT CAAGATCTAC TCAAGTTCAA CACAAACAAT
CCAACTGCAT TACAGCTTGC GGGTGCCGTC GAATTCCAAC TACGTTCGTA TATGCAGGCG
GAAACTTACC TGAATAAAGC CCTCTCGCAA GCCCCTGAAT TGCGCTTAGC ACGACGCATT
TTAGTTGCCA CCTATCTTCG TAACGGACAA GCAGCGAAAG CTCTGAACAC GCTCCAACCG
ATGCTTGACA AGGCAGATAC TGATTCAGCA CTACTAACGC TGGCAGGAGA GACCTATTTG
CAAAATGGGG ATGCCAAAAA AGCCGAAGAG TATTTTGCAA AGGCCAGCAA GCTTGATCCG
AACGACCCCG GGAAGAAAAC GTCAATTGCT TTGACCCACT TGGCTCAGGG CGATGTTTCT
GGTGCAGTTG AGGATCTGGA ACAAATTGCC CAAACCGATA AAGGCGTGAG GGCAGACCTC
GCGTTGATCT CCACTTTTAT CCGTACCAAC CAAGCCGACA AGGCGCTGAA AGCAATCGAC
AGCCTTGAAA AGAAACAGCC TGACAACCCT GCAACGCATA ACTTGCGCGC CCAGACGCTG
TTGTTAAAGA AAGATCTGGC TGGCGCCCGC TCAAGCTATG AGGCTGCGTT AAAGATCAAT
CCGGCCTTCT TCCCCGCAGC CGCCAGTCTC GCGAAAATCG ATCTGGCAGA AAAGAAGCCA
GACGACGCAA AAAAACGCTT TGAAAACGTA CTCCTTGCCG ACCCAAAGAG CGTCCCCGCG
TTACTTGCCC TTGCTGAATT AAAAGCTGCG AACAAAGGTT CTGTTGATGA AGTTGCCGGC
TTAATCGGGA AAGCCATCAC GAGCAATCCA ACAGAAATCA GCCCACGGCT CGCTCTGATC
CAGTATTACC TTAGCCAAAA AGAGACCAAA AAGGCCTTGG GCGCTGCGAA TGACGCCGCT
GCAGCAATTA AAGACAAGCC AGAAATCATA GATGCCCTCG GTCGTACCCA GCAGATGGCC
GGAGACCTGA ATCAGGCTTT GGCAAGCTAC ACCAAGCTCG CAGCACTTCA GCCAGCCTCA
CCATTGCCCT TGGTAAGGAC AGCAGACGTT CATCTCGCGA ACAAGAATAA GGATGAAGCA
GCAAAGAGTC TAAAAAAGGC ACTTGAGATC AAATCGGACC TGGTTGAAGC GCAGCGAGGT
CTAATTTTGT TGGCACTGGA CGCAAAAAAG CCGAACGAAG CGCTGCAGAT TGCCCAACAG
ATTGAAAAAC AACGCCCCAA GGAAGCCGTT GGTTTTGCGC TAGAAGGAGA CATCCACGCC
ACATCAAAGA ATTGGACTGA GGCGGCAAAT GCCTATCGTA ATGCAATAAA ACGAGCCGGC
AGCGCAGACA TTGCCATCAA GCTTCACTCC GTATTACTGG CATCGGGTAA CCCCCAAGAA
GCAGGACGGA TGGCAGCAGC ATGGCAGAAA GAACACCCCA AAGACATTGC ACTGCTCGTT
CATCAAGGGG ACGTAGCGAC CGCTCGCAAG GACTATTCAT TGGCGGCACA ACATTATCGT
CAAGCGCTCG ACATCCAGCC AAACAATGCG CTTGTCCTGA ACAATTTAGC CTGGGTATCC
GGGGAACTCA AAGCACCAAA AGCAATCGAG TATGCAGAAA AGGCCAACCA ACTGGCGCCA
GGGCAACCAC AATTCATGGA CACCCTCGCA ATGCTACTTG CGCAAAAAGG CGAAACCAAA
CGGGCCATTG ACCTCTTACG TAATGCTATG AACGCCGCGC CAAACGCCGC ATCGATTCAG
CTCAACCTCG CGAAGGTATT GATATCCGCC GGCGAGAAAA AAGAGGCCCG CAAGGAGCTT
GAGGCCCTTG CGAAGCTAGG CGACAAATTC TCCGGCCAAC CGGAGGTTGC TAAACTGCTG
CAGGCTCTTT GA
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| Protein sequence | MKKNRFFITS ALTTALLAAF LGGCGDSPES LIASSREFLA KNDNKAAVIQ LKNALQQNPS
LGEARFLLGK TLLETGDAAG AEVELRKAQD LKYSPEQTTP LLAKAMLGAG QAKKLIDEFG
KTDSLSGESL AALKTTLSVA YLIQGNQDAA QSALSDALKA QPDFAPALLS LARSKVTNRD
IDGAQALVAQ VLEKNPKNHD ALLLNGSLQG VKSGPEAALA EYRKAIEAKP DFIAGHAALI
TTLFQQQKFD EASTQLDALR KIAPKHPQTL YLDAQASYQR KDFQGARSKL QDLLKFNTNN
PTALQLAGAV EFQLRSYMQA ETYLNKALSQ APELRLARRI LVATYLRNGQ AAKALNTLQP
MLDKADTDSA LLTLAGETYL QNGDAKKAEE YFAKASKLDP NDPGKKTSIA LTHLAQGDVS
GAVEDLEQIA QTDKGVRADL ALISTFIRTN QADKALKAID SLEKKQPDNP ATHNLRAQTL
LLKKDLAGAR SSYEAALKIN PAFFPAAASL AKIDLAEKKP DDAKKRFENV LLADPKSVPA
LLALAELKAA NKGSVDEVAG LIGKAITSNP TEISPRLALI QYYLSQKETK KALGAANDAA
AAIKDKPEII DALGRTQQMA GDLNQALASY TKLAALQPAS PLPLVRTADV HLANKNKDEA
AKSLKKALEI KSDLVEAQRG LILLALDAKK PNEALQIAQQ IEKQRPKEAV GFALEGDIHA
TSKNWTEAAN AYRNAIKRAG SADIAIKLHS VLLASGNPQE AGRMAAAWQK EHPKDIALLV
HQGDVATARK DYSLAAQHYR QALDIQPNNA LVLNNLAWVS GELKAPKAIE YAEKANQLAP
GQPQFMDTLA MLLAQKGETK RAIDLLRNAM NAAPNAASIQ LNLAKVLISA GEKKEARKEL
EALAKLGDKF SGQPEVAKLL QAL
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