| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2357 |
|---|
| Symbol | |
|---|
| ID | 3566039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 2541685 |
|---|
| End bp | 2542854 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637680824 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_285563 |
|---|
| Protein GI | 71907976 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 0.0768636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.579443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAACAAA AGAAAATCAT CAAATGGCTG GGTTCGCTGG CTGCTGCTGC CAGCCTGATC
GCTGCACCGC TGGCGCAGGC CGAGGAGGAA ATCGTCATCG GCGGTTCGAT CCCGATGACC
GGCGTCTTTG CTTTTGCCGG CATTGGCATC CACGCTGGCA TCACCGACTA CGTCAAGATG
GTCAATGACG CCGGTGGTAT CAAGGGGCGC AAGATCAATT ATGTGCCCGA GGATACCGGC
TACAAGGTCG ATGCTTCGGT CGCCGCGTTC AAGAAGATCA CCAGCCAGAA CAAGGTGAAC
CTGTACTACG GCGATTCGAC CGCCTTCGCC AAGACGATCA ATCCGGAACT GGAACGCATG
GGCAGCATCA TGATGGCCGG TGCCTCCTTT GCCACCGAGA TCAACGATCC CAAGAAATAT
CCGAATCAGT TCCTGGTCGG CCCCGATTAC ACGGAAATGA TGGGCATCCT GATGCGCCAC
ATTGCCAAGG AAAAGCCGGG CGCCAAGGTG GCACTGGTCT ATTCCGACAC CGAGTTCGGG
CGCGATCCGA TCGACGAAGG CGAGGCGCTG GCCAAGAAAC TCGGTCTCAA TGTGACCGGC
AAGATCATGA CGCCGCCGGG CAGCGTCGAT GTCTCTACCG AGATCGTCAA GCTGCGTCGT
GCTGCCCCTG ACTACACCAT CTTCCATGGC TACGTCCTGG CCCCGATTCC CGAGTTCATC
TCGCAGGCGC GCAAGATGGG CATGACCAGC CAGTTCATGG GTACCTTCTG GTCGATGGAC
AACTCGATGG TCATGAAGAT GGGCGAGGCG GCCGAAGGCT TCATGGGGGT CATGCCTTTC
CGCTACTACT ACGAGAGCGA TGCCAAGGCC CCCATGCTGG ACAAAATCCG CAAGATGCGG
CCGGAGTACC AGTCCAACGC CTACATGCAG GGCTTCCTGA CCGCCATGCT GTTCACCGAG
GCCACCAAGC GCACCCTTGA TGCCGGCAAG CCGCTCGATG GCAAGAACCT GAAGGCATCG
CTGAACACCA TCAAGAACTT TGACACCGGT GGCGTGGTTG GCGTGCCGAT CACCATTCGC
GGCAATTCCA TCCCGGTTGG CCGTATCTAC CGCTTCGATG CCAAGCAACA GAAGATGCTG
CCGGCCTCGG ACTGGATCCA CCTGGACTGA
|
|---|
| Protein sequence | MEQKKIIKWL GSLAAAASLI AAPLAQAEEE IVIGGSIPMT GVFAFAGIGI HAGITDYVKM
VNDAGGIKGR KINYVPEDTG YKVDASVAAF KKITSQNKVN LYYGDSTAFA KTINPELERM
GSIMMAGASF ATEINDPKKY PNQFLVGPDY TEMMGILMRH IAKEKPGAKV ALVYSDTEFG
RDPIDEGEAL AKKLGLNVTG KIMTPPGSVD VSTEIVKLRR AAPDYTIFHG YVLAPIPEFI
SQARKMGMTS QFMGTFWSMD NSMVMKMGEA AEGFMGVMPF RYYYESDAKA PMLDKIRKMR
PEYQSNAYMQ GFLTAMLFTE ATKRTLDAGK PLDGKNLKAS LNTIKNFDTG GVVGVPITIR
GNSIPVGRIY RFDAKQQKML PASDWIHLD
|
|---|
| |