| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2175 |
|---|
| Symbol | |
|---|
| ID | 3569817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 2349318 |
|---|
| End bp | 2349854 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637680644 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_285384 |
|---|
| Protein GI | 71907797 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.000201065 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGATA TTTACGTCGA ATTCAAGGGT AGTGACATCA AGGGCGATTC CCGCGATGCC
AAGCACAAGG ACACGGTTGA GGTTTACAGC TGGAGCCACA CCATGCGCCA GCCGAAGTCG
GCAACGGCAT CGGCTGCTGG CGGCCATACT GCCGAGCGCG TCGAACACGG CGAAATGATC
TTTACCAAGG ATATCGACGG TTCCAGCCCG AAGCTGTATC AGGCTTGTTC GTCCGGCCTG
GTGGTCAGCG ATGTCATCAT CTACTTCTAC CGCGCTTTCG GTGGTCAGAA TACGACCGGC
AATCCGTCGG CTACCCAGAA TCGTCATCAG TACCTGAAGA TCGAACTGAA GAATGTCATC
ATCGCCTCGG TTTCCCCGGC TGTTGATGAG GAAGGCATTC CCAAGGAAAG TTTCTCGCTG
AAGTATTCCG CCGTGAAGTG GACCTACGAC GAGCTGAACA TCGACGGTAC CAAGTCCGGC
AAGGTCAATA TCCAGGGCGC CTGGAACCTG GCCAAGAACA CGCCGAATCT GACCTGA
|
|---|
| Protein sequence | MKDIYVEFKG SDIKGDSRDA KHKDTVEVYS WSHTMRQPKS ATASAAGGHT AERVEHGEMI
FTKDIDGSSP KLYQACSSGL VVSDVIIYFY RAFGGQNTTG NPSATQNRHQ YLKIELKNVI
IASVSPAVDE EGIPKESFSL KYSAVKWTYD ELNIDGTKSG KVNIQGAWNL AKNTPNLT
|
|---|
| |