Gene Daro_2048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_2048 
Symbol 
ID3567060 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp2208515 
End bp2210998 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content59% 
IMG OID637680523 
Productresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_285263 
Protein GI71907676 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value0.589876 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGATG CTGCGCTTCA CGTACTTCTG GTTGAAGACA ATTCGGACGA CGCCCGACTG 
ATCGAAGCGG CACTGGATCA CCAAGGAGGG GCGACCTACC AGATCGATAA GGCTGCACGT
CTGTCTGAGG CCCTGAACTG TCTGGGCAAG GCGAATTTCG ATATCGTCCT GCTCGATCTC
AGTTTGCCTG ATGGACAAGG CATAGCAGTT TTCGAGCAGG TCTCCCGCCT GGCGGCCAAT
GCACTGATTC TCATCCTGAG TTCGGCCGAC GATGAAGAGG TGGCACGCCT GGCCGTACAG
AATGGCGCCG ACGATTACTT GGTCAAGGGC CTGGTCGATG CCCACTGGTT GCCGCGCACG
CTGCGCTACC TGATAGAGCG CAAGACAACA CGCCAGGCCC TGACTCTCAG CGAAGCCCGT
TTTCGTGCCA TGAGTGATGC CTCGCCGCTT GGCATCTTCG TCTCGGACAT CCACGGCGAA
TGCGTCTATA CCAACGCGGC CTATCACAAG ATATCGGGGC TGAATCTGGA ACAGACCCTG
GGCACCAACT GGAGCATGGC GATTCATCCC GATGATCGCC AGCGCGTCCT GCTCGAATGG
CGGGCAGCGG CGCTCGGCGA GGCAACATTT CAGACGGAAG CCAGGTTTCT GCGAGCCGAC
GGCAGTATCG TCTGGGCCCG CCTGAATGCG GCGGCCATGC TGGATGGCCT GCATCTGCGC
GGCCATGTTC AGACGGTGGA AGACATCAGC GAACGCAAGA TAACGGAGGA CGCCCTGTTC
GAGGAAAAGG AGCGCGCCCA GGTAACGCTC AATTCCATCG GCGACGCGGT ATTGACGACC
AATCTGAAGG GTGATGTGAC CTACCTGAAT CTTGTCGCCG AGATGATGAC CGGCTGGCCC
AGGGAGGCGG CTATCGGTCA GCCGCTGTCC GAGGTATTCA GAATTCTCAA CGGTACAACT
CGTGAGGTGG CGCCAAATCC AGCGCAGCTG GCCATTCGCG AGAATCGAAC GGTCGGGCTG
GCCGCGGACA GCATCCTTAT TCATCGCGAT GGTCTGGAAG CTGCTATCGA GGATTCGGCG
GCGCCGATTC ATAACCGGGA CGGCCAGGTG GCCGGTGCGG TCATTGTTTT TCACGACGTC
AGCGAGTCGC GGGCCATGGC GCTGAAGATG GCGCATCTGG CCCAACACGA TTTCCTGACC
GGCTTGCCGA ATCGGGCTTT GCTGACTGAG CGTCTTTCGC GAGCGATTGG CCAGGCGCGG
CGGCACAACA AGCGGGTCGG AATGTTGTTT CTCGACCTCG ACTATTTCAA GCATATCAAC
GACTCCCTTG GGCATGCCGT CGGCGACCAG TTACTGCAAC AGGTCGCCGA GCGTCTGATC
GTCTGCATCC GCGATACCGA CACGGTTTGC CGGCAGGGCG GGGATGAGTT CGTGATCCTG
CTTGCCGAGA TCGAGCAGGC GAGGGATGCC GCACCGATTG CTGAAAAACT TCTCGCCGCT
TTTGCCGAAC CCTGCCTGAT TGCCGGGAAT GAGCTTCACG TCTCCCTGAG CATCGGTATC
AGCATTTATC CCGATGATGG GATGGATGCC GATACCGTGA TGAAGAATGC CGATACCGCG
ATGTATCACG CCAAGGCCAA CGGCCGGAAC AATTACCAGT TTTTCACCAC CGAAATGAAT
ACCCGTGCCG TCCGGCGCCT GTTTATCGAA GGCAACCTGC GCCGTGCACT GCGCCAGGGC
GAGTTCATGC TCTATTACCA GCCCAAGATC GATCTGGCTT CAGGGATGAT GATCGGCAGC
GAAGCCCTGA TCCGCTGGCA GGACCCTGAA CATGGGCTGG TTTATCCCAA GCAGTTCGTG
CCGATCGCCG AAGAATCGGG TCTGATCGTC CCGATTGGCA GTTGGGTACT GCGCGAAGCC
TGCCGTCAGG TCCGTGCCTG GCAGGAATCC GGGCTGGTGG CCGTGCCCGT TTCAGTCAAC
ATTTCAGCCG TCGAGTTTCG CCACAAGGAC TTTCTCGAAG GGGTGGCACT GATCCTGAAG
GAAACCGGCA TGCTGCCCAG TTATCTCGAA CTGGAATTGA CCGAAAGCAT CCTGATGCAC
GATGCCGAAT CGTCGGCGAC GGTACTGGAA GCGCTGAAGA CGATGGGCAT GCAGCTGGCC
ATCGACGACT TTGGCACCGG CTATTCGAGC CTCAGCTATC TGAAGCGCTT TCCGATCAAT
ACACTGAAGA TCGACCAGTC GTTCGTTCAT GACATTGCGA TCGATCCGGA CGATGCCAGC
ATCGTCGGCG CCATGATCGG CATGGGCAAG AACCTCAAGC AGCGCGTCGT TGCAGAGGGC
GTGGAAACCG AGGAGCAACT GGCTTTCCTG CGCACGCTGC ATTGCGATGA AGGGCAGGGC
TTCCTGTTCG GCCGTCCTTT GCCGGCCGAT GAATTCGCCC GCCTGCTGCT CAATGACCGT
GGTTTTTCCG CCGACCTGAA CTGA
 
Protein sequence
MNDAALHVLL VEDNSDDARL IEAALDHQGG ATYQIDKAAR LSEALNCLGK ANFDIVLLDL 
SLPDGQGIAV FEQVSRLAAN ALILILSSAD DEEVARLAVQ NGADDYLVKG LVDAHWLPRT
LRYLIERKTT RQALTLSEAR FRAMSDASPL GIFVSDIHGE CVYTNAAYHK ISGLNLEQTL
GTNWSMAIHP DDRQRVLLEW RAAALGEATF QTEARFLRAD GSIVWARLNA AAMLDGLHLR
GHVQTVEDIS ERKITEDALF EEKERAQVTL NSIGDAVLTT NLKGDVTYLN LVAEMMTGWP
REAAIGQPLS EVFRILNGTT REVAPNPAQL AIRENRTVGL AADSILIHRD GLEAAIEDSA
APIHNRDGQV AGAVIVFHDV SESRAMALKM AHLAQHDFLT GLPNRALLTE RLSRAIGQAR
RHNKRVGMLF LDLDYFKHIN DSLGHAVGDQ LLQQVAERLI VCIRDTDTVC RQGGDEFVIL
LAEIEQARDA APIAEKLLAA FAEPCLIAGN ELHVSLSIGI SIYPDDGMDA DTVMKNADTA
MYHAKANGRN NYQFFTTEMN TRAVRRLFIE GNLRRALRQG EFMLYYQPKI DLASGMMIGS
EALIRWQDPE HGLVYPKQFV PIAEESGLIV PIGSWVLREA CRQVRAWQES GLVAVPVSVN
ISAVEFRHKD FLEGVALILK ETGMLPSYLE LELTESILMH DAESSATVLE ALKTMGMQLA
IDDFGTGYSS LSYLKRFPIN TLKIDQSFVH DIAIDPDDAS IVGAMIGMGK NLKQRVVAEG
VETEEQLAFL RTLHCDEGQG FLFGRPLPAD EFARLLLNDR GFSADLN