Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_1988 |
Symbol | |
ID | 3570237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 2137756 |
End bp | 2139843 |
Gene Length | 2088 bp |
Protein Length | 695 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637680459 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_285204 |
Protein GI | 71907617 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.407024 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAATC TTTCGCGTTA TTTCTCGACG GTCAGTTTCA TCCTAATCGT GTTGGCAGCG GGGGTACTTG GCCCTCTGTA CCAACGGCTT TCGCTGCTGC AGATGCAGAA TCTGGCGGAG AGCCGAAATA TCGCCATGGC GCAGGTTTTC CAGAATTCGC TGCACACACA ACTGGAGTCG CTGATCAGCG ATGCCGTCGG CCGGGACATC CATTCAGGCC AGGTCACCGA TGACATCCTT CAGTTGCAGG CCACGGTGCA TGATCTGATG CGGGATACCT CCGTGATCAA GGTCAAGGTC TACAACCGCC TGGGAAGTAC CATTTTCTCG ACGGATACCA GGCAAATTGG TGATAGCCAG TTGCAGAACC CGGGCTTCCG AGCGGCGATC AGTGGTTTGG TAACCAGCGA GTTGATACAT CGAAACACCA TCGATGCCTT CGAAGGGCAG TTGGTCGAGG TCGATGTCCT GTCGAGCTAT ATTCCCATAC TCGGCAAAGA ACACGCGGTC GAGGGCGCCT TTGAGCTCTA TCAGAACGTC ACTCCCTTTG TTACCCAGTT GAACCGCAAT CTGTGGTGGG TGACGGCCGC CGTGGTGCTG GTGTTCGCCG CGCTCTACCT GATGCAGTTC CTGGTTGTTC GGCGGGCCCA AGGTATTCTG GAAGACCAGG AGGGGCGCAT CAAGGCGGCG CGCGATACGC TGGAGATTCA GGTGGCGGCC CGTACGGAAG AATTAAAGCG GACCAACAGC CAGCTTGAGG GCGAAATTTC GGAGCGGCGG CAGGCGCAAA GCAAGCTCAA TTATCTGGCT TATCACGATC CGCTGACCGG CTTGGCCAAC CGTCGCTGTT TTATCGAACG ACTCGAGGAA AGTCTCAGCG AAGGCGAGCG CCATGGCGAA AAACTGGCCG TCTTGTACAT CGATCTCGAC CAGTTCAAAC AGGTCAACGA TTCCCTTGGC CATGGCGTTG GCGACGAACT GCTTGTTTCG GTCGCCGCCC GCCTGTCTGA GCACGTTCGG CTGATCGACA TGCTGGCCCG CCTGGGGGGG GACGAATTCA TCTGCCTGAT GGAGGCCGCG CGCAGCGAAG ATGAGGTCGA ACTTCTGGCT CGCGAAATCA TTGCTGCGTT CGAATACCCG TTCAAACTGG GCGACCATGA ACTCTTTCTG ACGGCATCGG TCGGCATCAG TCTTTGCCCC AGTGACGGCA ATAGCGTGCT TGATCTGATG CGCAATGCCG ATACGGCCAT GTATCGGGCC AAAATGCTGG GCCGCGGCAA TTTCCATTTT TATACGGCCG AAATGACCCG GGAGGCCCAG GAGCGTATCC AGATGGAAAA TCTGCTGCGG CGCGCCCTCG ACAACGGGGA ACTGTCGGTC CATCTGCAGC CACAGGTTGA TTCCCGGAGT GGTCAGCTGG TTGGTGCAGA GGCCCTGGTT CGCTGGAACA GTCCGGAGCT CGGACAGGTC ATGCCGATAC GCTTTATCCC ATTGGCTGAG GACTCGGGGT TGATAATCGG ACTCGGCAAC TGGGTCTTGC GCGAAACCTG CCGCCAGTTC ATGCAATGGC GGATGAGCGG TTTCGAGTTG CCGCAGGTTT CGGTCAATCT CTCGGTCAAG CAGCTGGAGC GCCCGGAATT CATCGACGTG CTGGACAAAA TACTCGACGA AACCGGTATG GACCCGACCC TTCTCAAGCT GGAATTGACT GAATCCGTGG TCATGGCCGT CGGTGATGCC TTTACCCCGC TTGAACGCTT GCGCGATCTC GGGATCAGCT TGGCGCTGGA CGATTTCGGC ACCGGTTATT CGTCTCTCAG CTATTTGAAG ATGCTGCCGG TCCAGCAACT GAAGATTGAT CGCTCGTTTG TTGAGGGCAT TGGCCGAAAT TCTGGCGATG AGGCCATCAT CCGGACCATC ATGGAACTGG CCAGGAGTCT TGGTTTTGAG GTGGTGGCGG AAGGCGTTGA AACCGTCGAG CAAGCCAACT TTCTGGCTGA TCTTGGGTGC GAGCAGTTGC AGGGTTTTTT GCATGGACAG GCGGTGAGCC CCGTGGAGTT TCGCGCCCGC TGGTCTGTTC GCCCATGA
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Protein sequence | MFNLSRYFST VSFILIVLAA GVLGPLYQRL SLLQMQNLAE SRNIAMAQVF QNSLHTQLES LISDAVGRDI HSGQVTDDIL QLQATVHDLM RDTSVIKVKV YNRLGSTIFS TDTRQIGDSQ LQNPGFRAAI SGLVTSELIH RNTIDAFEGQ LVEVDVLSSY IPILGKEHAV EGAFELYQNV TPFVTQLNRN LWWVTAAVVL VFAALYLMQF LVVRRAQGIL EDQEGRIKAA RDTLEIQVAA RTEELKRTNS QLEGEISERR QAQSKLNYLA YHDPLTGLAN RRCFIERLEE SLSEGERHGE KLAVLYIDLD QFKQVNDSLG HGVGDELLVS VAARLSEHVR LIDMLARLGG DEFICLMEAA RSEDEVELLA REIIAAFEYP FKLGDHELFL TASVGISLCP SDGNSVLDLM RNADTAMYRA KMLGRGNFHF YTAEMTREAQ ERIQMENLLR RALDNGELSV HLQPQVDSRS GQLVGAEALV RWNSPELGQV MPIRFIPLAE DSGLIIGLGN WVLRETCRQF MQWRMSGFEL PQVSVNLSVK QLERPEFIDV LDKILDETGM DPTLLKLELT ESVVMAVGDA FTPLERLRDL GISLALDDFG TGYSSLSYLK MLPVQQLKID RSFVEGIGRN SGDEAIIRTI MELARSLGFE VVAEGVETVE QANFLADLGC EQLQGFLHGQ AVSPVEFRAR WSVRP
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