| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1946 |
|---|
| Symbol | |
|---|
| ID | 3567875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 2098362 |
|---|
| End bp | 2100128 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637680417 |
|---|
| Product | Beta-lactamase |
|---|
| Protein accession | YP_285162 |
|---|
| Protein GI | 71907575 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.220663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCACC GCCTCGCCCC ACTCCTTGCC GGTGTCGTTC TTTTGCTCAG CGGCTGCGCC
ACGCCTCCAC CCGCATCACA AAACGACGTC CGCGGCGACT ATGGCCATAC ACAGAAACAC
CTGGCCTGGC TGATCGACCG TGAGATGGCG CAAAACGAAA TCACCGGAAT CAGCATCGCG
TTGGTCGATA ACCAGCAGGT TGTGTGGCAA CAAGGCTTCG GTTACGCCGA TCTGGAAAAC
AAGACACCGG CGACACCAGA AACGATCTAT CGAGCCGGCT CCATCGCCAA GGTATTTACC
GCTGCCGCCA CCATGCAACT GGCCGAACAG GGCAAACTCG ACATCGACAA CCCCCTGGCG
TCTGCGCTGC CCGAATTCTC GATCAAGAGC CGCTTTCCCA ATGCCGCCCC GGTGACACCG
CGCAACATCA TGTCTCACCA CTCCGGGCTG CCATCGAATT TCCTGCGCGG TCTCTTCGTT
CGCGATCCTG ATCGCTTCGA CTCGGTGGTT GAGGCCATCC ACGACGAACA TCTCGCCTTT
CCACCCAACT ACGTTTTTTC CTATTCAAAT CTCGGCGTGG CGCTGCTTGG CGCAGCAATC
CAGAAGGTCA GTGGCGAAGC CTTCGATATT TACATGCATA ACCACCTCTT CCTGCCACTA
GGCATGCCCC AGAGCAGTTT CGCCCAACGC CCGATCGCCA AGACCTACGA TCGCAACAAG
GAGAGCGAGG CTTTCTCGCT GCGCGACATG CCGGCCGCTA ATCTGCTGAG CAATGTCGTT
GACCTGAGCC AGTTCATGAA AATGCAGTTT GCCGACGGCA AGTCAGGCAA ATATCAAGTG
CTATCCGCAG CCTCCCTGCA CGAGATGGTA CGCATCCAGA ACAAGGATTT CCCGCTAACC
TTCAAGCAAT ACGTCGGCCT CGGCTGGATG ATGAGCGGCA TCGACATTCC CGGCGGTGGC
CCGGTGGCCA GTCACGGCGG CTCACTGCCC GATTCGCACA GCATGATGGC CATCTTGCCG
GAGCACAAAC TGGGGGTTGT CGTTCTTTCC AACTCAGCCA CCTCGCATGT CGCCGTCTCG
AAAATCGCTA CCGAGGCCCT ACGCCTGATG CTGGAAGCCA AGACCGGCAT TCGCCAAAAC
CCGGAACCAC CAGTCCGTGC CGCCGAGCGC GCACCAAGCT CCGAAGAGTT GCGCCAGTTC
GACGGCAATT TCGACACGAT GGTCGGACTA GCCAGAATCA GCACAAAATC CGGTCAAATA
GACGTTGACG CCGCCGGCCA CCAATTCCGC CTGGTGCCAC ATGAAGATGG GCTGCTAACG
ATCAAATACA AGCTTCTCGG CATGCTGCCA GTGCGCGTTG GAGCTTTCGA GGACATCCAC
CTATCGATGG CCAATGTCAA CGGGCGCCAG ATCATCGTTG GAAGAATTGG AAACGAATCG
CTGATCTTCG GTGAAAAACT AAAACCCTCG GTCATTCCCG AGCGATTCCG GCAAAATCTT
GGCAATTACG AAATCGTCGG CAAGATTGAT GGCCCATCGC CTGACAGGCT TTTGCTCAAG
GAAGACCATG GCATGCTGAT CGGCGAAGCC CACTTTCCCG AGGTTCCCGA TCTGTTGTTG
AGGATCGCTT TCCTGCCGGT ATCCGACAAC GAAGTGATTA CCGCTGGCCT GGGTACCAGC
CGGGGCGATA CACTACGCCT GATCGAAGCG GGCAATGAAG CCATGCTGGG CTTTTCCGGC
ATTCAAATGC GCAAGAAACT GAACTAA
|
|---|
| Protein sequence | MNHRLAPLLA GVVLLLSGCA TPPPASQNDV RGDYGHTQKH LAWLIDREMA QNEITGISIA
LVDNQQVVWQ QGFGYADLEN KTPATPETIY RAGSIAKVFT AAATMQLAEQ GKLDIDNPLA
SALPEFSIKS RFPNAAPVTP RNIMSHHSGL PSNFLRGLFV RDPDRFDSVV EAIHDEHLAF
PPNYVFSYSN LGVALLGAAI QKVSGEAFDI YMHNHLFLPL GMPQSSFAQR PIAKTYDRNK
ESEAFSLRDM PAANLLSNVV DLSQFMKMQF ADGKSGKYQV LSAASLHEMV RIQNKDFPLT
FKQYVGLGWM MSGIDIPGGG PVASHGGSLP DSHSMMAILP EHKLGVVVLS NSATSHVAVS
KIATEALRLM LEAKTGIRQN PEPPVRAAER APSSEELRQF DGNFDTMVGL ARISTKSGQI
DVDAAGHQFR LVPHEDGLLT IKYKLLGMLP VRVGAFEDIH LSMANVNGRQ IIVGRIGNES
LIFGEKLKPS VIPERFRQNL GNYEIVGKID GPSPDRLLLK EDHGMLIGEA HFPEVPDLLL
RIAFLPVSDN EVITAGLGTS RGDTLRLIEA GNEAMLGFSG IQMRKKLN
|
|---|
| |