Gene Daro_1939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1939 
Symbol 
ID3567868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp2088163 
End bp2088768 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content58% 
IMG OID637680410 
ProductLexA repressor 
Protein accessionYP_285155 
Protein GI71907568 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value0.269028 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.116637 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCA CGCCACGTCA GCAGGAAATT CTCGACTTCA TCAAGAGTAC CCTCGAGGTG 
CTCGGTGCGC CGCCGACGCG TATGGAAATT TCCAGCGCCT TCGGTTTCGC TTCGCCCAAT
GCGGCGGAAG ACCACCTCAA GGCACTGGCC AAGAAAGGTG CCATCGTACT CGAACCCGGT
TCGGCGCGAG GCATACGACT CGTTGAACAG CTTGGTTTGC CGTTGATTGG CAGTGTCGCC
GCTGGCTCGC CCATCCTGGC CGTCGAGAAC ATGCAGGGTC GCTATGCGCT GGATGCCAGC
CTGTTTGCGC CGAAGGCTGA TTTTTTGCTC AAGGTGCGCG GTCTGTCGAT GATCGATGTC
GGCATCTTTG ATGGCGACTT GCTTGCCGTG CACAAGACCA ACCAGGCGCG TGACGGCCAG
ATCGTTGTCG CCCGGCTGGA TGAAGAGGTC ACGGTCAAGC GCCTGGAGCG CAGTGGTGGT
CAGATCAGGC TGATTGCCGA AAATCCTGAT TTCGAGCCGA TCATCGTTGA TCCGGAAGCA
GTCGATTTCG CCATCGAAGG CATTGCTGTC GGCCTGATTC GCGGGGCTGT TTCCAAGCTG
TCGTGA
 
Protein sequence
MKLTPRQQEI LDFIKSTLEV LGAPPTRMEI SSAFGFASPN AAEDHLKALA KKGAIVLEPG 
SARGIRLVEQ LGLPLIGSVA AGSPILAVEN MQGRYALDAS LFAPKADFLL KVRGLSMIDV
GIFDGDLLAV HKTNQARDGQ IVVARLDEEV TVKRLERSGG QIRLIAENPD FEPIIVDPEA
VDFAIEGIAV GLIRGAVSKL S