Gene Daro_1919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1919 
Symbol 
ID3569576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp2060463 
End bp2063930 
Gene Length3468 bp 
Protein Length1155 aa 
Translation table11 
GC content64% 
IMG OID637680390 
ProductSMC protein, N-terminal 
Protein accessionYP_285135 
Protein GI71907548 
COG category[L] Replication, recombination and repair 
COG ID[COG0419] ATPase involved in DNA repair 
TIGRFAM ID[TIGR00618] exonuclease SbcC 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCC TTAGCCTGCG CCTGAAGAAC CTCAATTCGC TGAAGGGCGA ATGGACCATC 
GACTTCACCA AAGCCCCCTT CACCGACAAC TGCCTGTTCG CCATCACCGG CCCGACTGGC
GCCGGCAAAT CGACGCTGCT CGACGCCATC TGCCTCGCCC TTTACCACCA GACGCCGCGC
CTGAAGACCA TCTCGGCCAC CGACAACGAC ATCATGACGC GGCACACCGC CGACTGTCTG
GCTGAGGTGG AATTCGAGGT AAAGGGCGCC GTCTACCGTG CCTTCTGGAG CCAGCGCCGT
GCCCGCGACA AGATCGACGG CGCGCTGCAG GCACCAAAAG TGGAATTAGC CGCCGGCGAC
GGCACCATCC TCAGTACCCA AACCAACGAC AAGCTGAAGC GCATCGCCGA GATCACCGGC
CTCGATTTCC CGCGTTTCAC CAAGTCCATG CTGCTCGCCC AAGGTGGCTT CGCAGCCTTT
CTGAATGCCA GTGCCAACGA ACGGGCCGAA CTGCTCGAAG AACTGACCGG CACCGAGATT
TACGGCGAGA TTTCGCGCAA GGTTTTTGAG CAGGCACGCG ACGCCAAAAG CCAGCTCGAG
CAGTTAAAAG CCCGTGCCGA CGGCATGGAA CTGCTCTCCG AAGAGCAACG CGCCGCGATG
CAAGCCGAAG TCACCCGCCT CGACACGCAA CTCACCGACA CCCAGCGCCG CCACCAGCAA
ACCCAGAGCC AGCGCCAGTG GCGCCTCGAT CTGGCGCAGG GCGAGCAGGA AGTCAAAACC
GCCGAAGCCA GGCAGCAGGA GGCCGATGCA GCGCTGACAG CAGCGGCACC AGACCTGAAG
AAACTGGCCG ACAGCGAACC GGCCGAAGCC CTGAAGCCGC TGCACCAGCA ATGGCAACAG
GCTAGCGCCG CCTGCCAGCA AACCGAAACC GAACTCAAGG CCCTGCACGC CGAGCGCGAA
AAACTGCAGG CCCACCAACT CGCCCAGCAC CAAACCGCCA GCCAGTTAAG CGCCCAGGTC
GCCGCACAAG CCCAGCAAGC CCTGCAACAA AGCCAGCGCG AAGCCAAACA GCTCGACGAT
TTCTGCGCCA CCCACCCGCA ACGCGCCCAG CTTGGCGAAC GCCTCGGCGT CTGGCGCCAG
CAGTTTGAAC AGCGGGTCAA GCTGAACCGC GACCTCGCCG CCCAGCAACA GGCCCAACAG
AAGCTCGAAC AGGAAATCGC CGAAACCGCC CGCCAGAGCG CCACACAAGC CAGCGCTGTC
GCCAGCGCCG AAAAGGCCAA AACCACCGCT GACGCCGCAC TGGAAAAAAC CCAGACCGAG
CAGAACCTGC GCCTGGCCGG CCAGACCCTG GCCGAACTGC GCCAGCACTG GCAAGGCGAG
CAAGCCGGCC TCAACCGCTG GCAGCAACTC GAAGCCCTCG CTCAGCGCCG CCGCGAACTG
GCCGTGCTGC AAACAACTCA GGCCACGCAA GTGCAGCAGG GCGAACAAAA GATCGAGGCC
CAGGAAAAGG CGCTGGTCGC CCTGCGCGAG CAGCACAAGG AACTCGCCGC CCAGGTTGCC
GACAAGCAGA AACTGCTTGA GCAGGAACGC CGCATCCAGA GCCTGGAAAC GCATCGCCGC
CAATTGCAGC CGGGCGAGGC CTGCCCGCTG TGCGGCGCGC ACGAGCACCC GGCGATTGCC
GACTACGCCG CACTTGACGT TTCCGCCACT GAAACGGCGC TCAAGGAAAA ACAGGCCTTG
CTCGAAGCAT TGGTCCAGAA AGGCCAGCAA GCCAAAACCG AGCAGGCGGC AACGCAGGCC
ACGCAAAAGG AATGGCTGGC CCAGCAGGCC AAAACAACGC AGGAAATTGC CCGCGCCCAG
GCCGAATGGA CCGAATTCCT CGCCGGCCTG AGCAGCGAAA CGCCGCTCGC AACCGATGCC
TGGCAGGAAG CCCAAACCCT GGCCTCCGCC CGCAACGCCG CCGAACAGGC ACTCGCCAAA
CTCGCCGACC GGCTGAAAGC AGCAGACCAA GGCGAACAAG CCCTGAATGC GGCCCGCAAG
ACGGCCACCG AAGCCGCCCA GACCCTGCTC AACGCCAGCA ACCAACTCAA GTTGCTGCAG
CAGACAGCGC AAACCACTCA GCTTCGTCAG ACAGAACTGG CCAAAGCAGC ACAAACACTG
ACTCAAGAAC GGGCTGAACT CGACAGCAAA CTAGCCGCAA CGCTGACCGA TGCCGGCTAC
GAGACGCCTG ACGAACCCAC CATCTGGCTG CAAGAGCGCG ATGGCGAATG GCTGCACTGG
CAGCAAACGC AGAAACGCCG CCACGAACTG GCCGAAATCC TGATCAAACA GCAGGATCGT
TTTGATGCCG CGCAGACGCA GGCCGCGCAG TGGCTGGAAC GCTGGAAAAC GCAGGCCGCA
AAACGCCCGG TCGCTGAGCA GGAGCCAAGG CCTGACGAAG CCACCGACGA CCCGGCAGCA
GCCCTCACCC GCAGCGCCGA AACCATTGCC GATCTGACCC AACAGCTCGC CGCCCAGCAA
GGCCGCCAGA CGCAACTCGA AACCAACGTC ACGCAGCAGA AAAAGGCCGT GGACGAGGCA
TCGACTGCCT GGCAAACCGC ACTCGCCGCC AGCCCCTTCG CCGACCTCGC CGCCTACGCT
GCGGCGCTGC TGCCGACCGA TGAACGCCAG CGCCTGCAGC AATTGAAAGA AGCCCGGCAA
CTCGCCAAAC AGCAAGCCGA AGCGGTGCTC AAAGCCGCCG GCGAAAAGCT GCTCCGCCTG
CAAACCACGC CACCGCCGCA AGACTCCGCC GAGTCCCCCA TTCCACCGCT GGCCGAACTG
GAAGCAGCCC TAGCCCAACT CGAAACCAGC CGCCGCGAAC TCAGCGAACA ACTCGGTGCT
CAGCGCGCCC TGCTCACCCG CGATGAACAA GCCCGGCAAA GCCAGCAGGC GCTGTTCAAG
GATATCGCCG CGCAAACCGC CGAAAGCGAC CTCTGGCAGC GCCTCGACAG CCTGATTGGT
TCAGCGCGGG GCGACAAGTT CCGCAAGTTC GCCCAAGGCC TGACCCTCGA CCACCTGCTG
CACCTCGCCA ACAGCCACCT CGCCCGCCTG CACGGCCGCT ACCTGCTGCG CCGCAAAACC
ACCGGCGAAC TCGAGCTCGA CATCGTCGAC AGCTGGCAAG GCGAAGTCGC CCGCGACACC
CGCACCCTCT CCGGCGGCGA AAGCTTCCTG GTCAGCCTGG CGCTCGCATT GGCCCTCTCC
GACCTCGTCA GCCACAAGAC CAGCATCGAT TCGCTCTTCC TCGACGAAGG CTTCGGCACC
CTCGACGCCG ACACCCTGGA AATCGCCCTG AACGCCCTCG ACACCCTGAA CGCCAGCGGC
AAGATGATCG GTGTGATCAG CCACGTCGAA GGCATGAAGG AGCGGATTCC GGCGCAGATT
CGCGTGGAAA AAGGTGGCGG GGTTGGGTAT TCGCGGTTGA GGATTTAA
 
Protein sequence
MKILSLRLKN LNSLKGEWTI DFTKAPFTDN CLFAITGPTG AGKSTLLDAI CLALYHQTPR 
LKTISATDND IMTRHTADCL AEVEFEVKGA VYRAFWSQRR ARDKIDGALQ APKVELAAGD
GTILSTQTND KLKRIAEITG LDFPRFTKSM LLAQGGFAAF LNASANERAE LLEELTGTEI
YGEISRKVFE QARDAKSQLE QLKARADGME LLSEEQRAAM QAEVTRLDTQ LTDTQRRHQQ
TQSQRQWRLD LAQGEQEVKT AEARQQEADA ALTAAAPDLK KLADSEPAEA LKPLHQQWQQ
ASAACQQTET ELKALHAERE KLQAHQLAQH QTASQLSAQV AAQAQQALQQ SQREAKQLDD
FCATHPQRAQ LGERLGVWRQ QFEQRVKLNR DLAAQQQAQQ KLEQEIAETA RQSATQASAV
ASAEKAKTTA DAALEKTQTE QNLRLAGQTL AELRQHWQGE QAGLNRWQQL EALAQRRREL
AVLQTTQATQ VQQGEQKIEA QEKALVALRE QHKELAAQVA DKQKLLEQER RIQSLETHRR
QLQPGEACPL CGAHEHPAIA DYAALDVSAT ETALKEKQAL LEALVQKGQQ AKTEQAATQA
TQKEWLAQQA KTTQEIARAQ AEWTEFLAGL SSETPLATDA WQEAQTLASA RNAAEQALAK
LADRLKAADQ GEQALNAARK TATEAAQTLL NASNQLKLLQ QTAQTTQLRQ TELAKAAQTL
TQERAELDSK LAATLTDAGY ETPDEPTIWL QERDGEWLHW QQTQKRRHEL AEILIKQQDR
FDAAQTQAAQ WLERWKTQAA KRPVAEQEPR PDEATDDPAA ALTRSAETIA DLTQQLAAQQ
GRQTQLETNV TQQKKAVDEA STAWQTALAA SPFADLAAYA AALLPTDERQ RLQQLKEARQ
LAKQQAEAVL KAAGEKLLRL QTTPPPQDSA ESPIPPLAEL EAALAQLETS RRELSEQLGA
QRALLTRDEQ ARQSQQALFK DIAAQTAESD LWQRLDSLIG SARGDKFRKF AQGLTLDHLL
HLANSHLARL HGRYLLRRKT TGELELDIVD SWQGEVARDT RTLSGGESFL VSLALALALS
DLVSHKTSID SLFLDEGFGT LDADTLEIAL NALDTLNASG KMIGVISHVE GMKERIPAQI
RVEKGGGVGY SRLRI