| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1909 |
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| Symbol | |
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| ID | 3568831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 2051381 |
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| End bp | 2053879 |
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| Gene Length | 2499 bp |
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| Protein Length | 832 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637680380 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_285125 |
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| Protein GI | 71907538 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGTTGT TCGCGGAAAT GACGACGGAT GGGGTAGTCA CCCATGAGGC GCTGCTGGAC
AAGCTGGCGA CCCCCGTTTT CGCCAAGAAT CTGAACGGCC TCTATATCTA CGCCAACGAG
ATGGCCGGCA TCATGCTGGG GCGGCCTGCT CCAGAAATCC TCGGTCGCAA GGACAGCGAG
TTGTTCGCCA GCGAACTGGC TGGACGGATG CAGACATGCG ACGACAAGTT GTTGGCGAGC
GGGGAGAGTG CTTCCTGTGA GATTTGGTTG CCCGATCGCG GCCATGGTGG CGAACGATGT
TACTGGCTTG TCCGGAAAGT GCTTCGCGAT AAAAAGGGGC AGATTGTCGG GCTGGCCAGC
GTGGCGACGG ACATCACCGA TCGCAAGCGC CAGGAACTCG AACTGATCGC GCTGAAGAAC
AAGTTTGCCG CAACCCTTCA GGCGCTGCCG GACCTGATGT TCGAACTCGA CATCGAGGGG
CAGTTTCTCG ATTGCCATGC GCAGCAGTCG AAATTGCTGG TGGGTTCTCC GAGCGACATG
GTCGGCAAGA CCGTCCATGA GGTCTTGCCG CCGGACGTGG CGGCCATTTT CATCCAGTCG
CTGCACGAAG CCATGGAGCA GGGGATCTCC ACCGGTTCGC AGTTCCAGCT CGATCTTCCC
GAAGGGTCTC GCCGGTTCGA ATTGTCGGTG GCGCAAAAAG CTTCCGATGG TGACCATCAG
CCCCACTTCA TCGTCTTGTC ACGCGATATC ACCGACCGCA AGAATGCCGA GCATGCCTTG
CGGGAAAGCG AGTCGCTGAT GCGAGCCATC GTCGACAACA CCCCGGTTGA ATATTGGGCC
CGTGACCTCG AAGGCCGCTG CATCATGGAG AACGCCCTGG TGGTCGAGCA CTGGGGAAGC
CTGTTGGGCA AGCGCCCGGA GGATAGTGGT GTCAGCCCTG ACGAACTGGC CGTGTGGCAG
GAGAACAACC GACGTGTTTA CGAAGGTGAA GTGATTGAAG CAGAGGTCGA GTATCAGGTC
GGTGGCCAGA CGCGCATCTT CAACAATGTC GTTGCGCCAA TCAAGGTGGA TGGTCAAACC
ATCGGCATCG TCGGCTTCAA CCAGGACATC ACGGACCGCA AGCGGAACGA AGAGGAAATC
CACCGTCTGG CTTTCTATGA TTCGCTGACC CATCTACCTA ATCGGCGACT GATGTTCGAT
CGACTGGAAC ATGCGTTGAT CGGCAGTGCG CGGCGGAAAA GCCACGGTGC CCTGTTGCTC
ATCGATCTCG ATAACTTCAA GTTCCTCAAC GACACCCATG GCCATGAGGT GGGTGATGAG
TTACTGCTTG AAGTGGCCAA GCGTCTCAAA ACCTGTATCC GGCAGGGAGA TACCGCTGCA
CGGCTGGGCG GGGACGAGTT TGTGGTCATC CTCGAAGATA TCGACGGAGC CGGGAATGGC
ACCATTCAGG CCGAACTGAT TGCCGGCCAC ATCCAGGCCC AACTGAATCA TCCCTTCAGC
CTGGTCAGGC CCCCTGAAAG ATTGTCGATT GACTACCGTT GCGCCTCCAG TATCGGCATC
GCGCTGTTCG ACGACACGAT GGTCACCGCC AAGGAACTGC TGCGGCGGGC CGATACGGCT
ATGTACCAGG CCAAGGCAGC CGGGCGCAAT ACCCTGAGAT TCTTCGACCC TGAAATGCAG
GCTGCCGTCA CGCATCGGGC AGCCCTCGAG ACCGAGTTGC GCAAGGCGAT TGACGAACAG
CAGTTCCACC TGTGTTTTCA GGTCCAGATG GATCAATCCG GACGCCCGAC CGGTGGCGAG
GCGCTACTGC GTTGGGAGCA CCCGACCAGG GGAACGATCC CGCCGGCCAG CTTCATACCA
CTCGCCGAAG AAACCGGTTT GATCGTCCCC ATCGGCCAAT GGGTGCTGGC TACAGCCTGT
CGGCAACTGG CCGCCTGGTC ACAACAGCCG GAAACTTCCG GGCTCACCCT TGCGGTGAAT
GTCAGCGCTC GTCAATTCAG GCAGGCCAGG TTTACGGATC AGCTCAGGGA TCTCCTGCTC
CAAACAGGTG CCCCGGCCAC GCGATTGAAG CTGGAACTGA CCGAGAGCAT GATGCTGGAA
GATACCGAGG CCATCATTGG CCGGATGGCT GAACTCAAGC AACTGGGCAT CCGCTTCTCG
CTGGACGATT TTGGAACGGG CTACTCATCC CTGGCTTATC TCAAGCGTCT TCCGCTGAAT
CAGCTGAAGA TCGACCAGTC CTTCGTGCGT GACGTGCTGA CCGATCCCAA CGATGCCGCC
ATCGCCGAAA CCATCGTTGC GCTGGGCAAC ATCCTCGGCC TCGAAGTCAT CGCCGAAGGT
GTCGAAACTG ATGCCCAGTG GCGCTTCCTG GCCAATGTGG GATGCAAGAA CTACCAGGGC
TACCTGTTCG GCCGACCACT GCCGTTGCTG GAGTTCGAGC AATTCCTGCA AGGCTGCGAT
GCCGGTGCTA ACGGTGCGTT GGTCGATATT CCGGCTTGA
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| Protein sequence | MGLFAEMTTD GVVTHEALLD KLATPVFAKN LNGLYIYANE MAGIMLGRPA PEILGRKDSE
LFASELAGRM QTCDDKLLAS GESASCEIWL PDRGHGGERC YWLVRKVLRD KKGQIVGLAS
VATDITDRKR QELELIALKN KFAATLQALP DLMFELDIEG QFLDCHAQQS KLLVGSPSDM
VGKTVHEVLP PDVAAIFIQS LHEAMEQGIS TGSQFQLDLP EGSRRFELSV AQKASDGDHQ
PHFIVLSRDI TDRKNAEHAL RESESLMRAI VDNTPVEYWA RDLEGRCIME NALVVEHWGS
LLGKRPEDSG VSPDELAVWQ ENNRRVYEGE VIEAEVEYQV GGQTRIFNNV VAPIKVDGQT
IGIVGFNQDI TDRKRNEEEI HRLAFYDSLT HLPNRRLMFD RLEHALIGSA RRKSHGALLL
IDLDNFKFLN DTHGHEVGDE LLLEVAKRLK TCIRQGDTAA RLGGDEFVVI LEDIDGAGNG
TIQAELIAGH IQAQLNHPFS LVRPPERLSI DYRCASSIGI ALFDDTMVTA KELLRRADTA
MYQAKAAGRN TLRFFDPEMQ AAVTHRAALE TELRKAIDEQ QFHLCFQVQM DQSGRPTGGE
ALLRWEHPTR GTIPPASFIP LAEETGLIVP IGQWVLATAC RQLAAWSQQP ETSGLTLAVN
VSARQFRQAR FTDQLRDLLL QTGAPATRLK LELTESMMLE DTEAIIGRMA ELKQLGIRFS
LDDFGTGYSS LAYLKRLPLN QLKIDQSFVR DVLTDPNDAA IAETIVALGN ILGLEVIAEG
VETDAQWRFL ANVGCKNYQG YLFGRPLPLL EFEQFLQGCD AGANGALVDI PA
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