| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1554 |
|---|
| Symbol | |
|---|
| ID | 3566166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1665508 |
|---|
| End bp | 1666455 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637680022 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_284773 |
|---|
| Protein GI | 71907186 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.00157568 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00722114 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATTC CAGCATCACT GAACAAGAAC CTGTCGTTGC CGGTGCTCTG TGCACCGATG
TTCATCATTT CCAATCCAGA TCTGGTCATT GCCCAGTGCA AGAGTGGCGT CATCGGGTCC
TTCCCGGCGC TCAACGCCCG GCCCAAGGAA CTGCTCGACG AATGGCTGAC CCGGATCAAG
ACTGAACTGG CCACCGATCC AAAGGCCGCG CCATTCGCCG TCAATCAGAT CATCCATCCC
TCCAACGAGC GGCTGGAACA CGACATGGCC TTGTGTGTGC AACATGAGGT GCCGCTGATC
ATCACCAGCC TGTCGGCACC GACGGCTATC GTGCCGCATG TGCATGCCTA TGGTGGCAAG
GTCTTCCATG ATGTGATCAG TGTCCGCCAC GCTGAAAAGG CGCTCGAAGC CGGTGTCGAT
GGTCTGATCC TGGTCTGTGC CGGGGCAGGC GGCCACGCCG GCACGCTCAG CCCCTTCGCG
CTGGTCGGTG AAATTCGCAA GTTCTACGAC GGCCCGATCG CGCTCTCAGG CTCGATTACC
AATGGCCAGG CCATCCTTTC AGCGCAGGCC ATGGGGGCCG ATTTTGCCTA TATCGGCACA
CGTTTCATTG CCACGCACGA AGCCCATGCG GTCGACGCCT ATAAGCAGGC CATCGTCGAT
TCGGCCGCCA AGGATGTGGT CTACACCCCG TATTTTACTG GTGTGCATGG CAATTACCTG
AGCAAGAGCA TCGTTGCTGC CGGTCTTGAT CCGGCCAATT TGCCCGAGCG CGATAAAACC
GTGATGAACT TCGGTGGCGC GACAGCGGCC AAGGCTTGGA AGGACATCTG GGGCGCCGGC
CAGGGCGTTG GCACGATTGA TGACGTAATG CCGACCGCCG AACTGGTCGC CCGCCTGCAG
CAGGAATATC GCAGCGCCAA GAGCGCGCTG TGCAGCAATC CATTCTGA
|
|---|
| Protein sequence | MPIPASLNKN LSLPVLCAPM FIISNPDLVI AQCKSGVIGS FPALNARPKE LLDEWLTRIK
TELATDPKAA PFAVNQIIHP SNERLEHDMA LCVQHEVPLI ITSLSAPTAI VPHVHAYGGK
VFHDVISVRH AEKALEAGVD GLILVCAGAG GHAGTLSPFA LVGEIRKFYD GPIALSGSIT
NGQAILSAQA MGADFAYIGT RFIATHEAHA VDAYKQAIVD SAAKDVVYTP YFTGVHGNYL
SKSIVAAGLD PANLPERDKT VMNFGGATAA KAWKDIWGAG QGVGTIDDVM PTAELVARLQ
QEYRSAKSAL CSNPF
|
|---|
| |