Gene Daro_1549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1549 
Symbol 
ID3566161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp1659110 
End bp1661509 
Gene Length2400 bp 
Protein Length799 aa 
Translation table11 
GC content61% 
IMG OID637680017 
Product3-hydroxyacyl-CoA dehydrogenase 
Protein accessionYP_284768 
Protein GI71907181 
COG category[I] Lipid transport and metabolism 
COG ID[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000000385995 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00376612 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
TTGAACAAGC TGATCGTGAA GAAAGCCGCC GTGCTGGGCG CCGGCGTGAT GGGAGCGCAG 
ATCGCGGCGC ACCTCGCCAA TGCCAATGTG CCGGTCGTGC TGTTTGACCT GCCGGCAAAA
GAAGGAGACA AGAACGGCAT CGTGAAGAAG GCCATCGACG GCCTCAAGAA GCTGGACCCG
GCCCCGCTGG CCAGTAAGGG CAAGCTGAAA TTCATCGACG CCGCCAACTA CGATGAACAT
CTGCCGCTGC TCGCCGAATG CGATCTGATC ATCGAAGCCA TTGCCGAACG CATGGACTGG
AAGAATGATC TTTACGCCAA GATTGCGCCG CACATCGTAC CGAACGCCAT CGTCGCTTCC
AACACCTCGG GCCTGTCGAT GAACCTGCTG GCTGAAGGCT TGCCGGCCAA TATTCGCCCG
CGCTTCTGTG GAATCCACTT TTTCAATCCG CCGCGCTACA TGCATCTGGT CGAGATCATC
TCGACCAAGA CGACCGACGG TAGCACGCTC GATGCGCTGG AAACATGGCT GACCTCGCGC
TTGGGCAAGG GCGTTATCCG GGCCTTGGAT ACGCCGAATT TTGTCGCCAA CCGGATCGGC
GTCTTTTCCA TTCTCGCCGT CATGCATCAC ACCCAGGCCT TCGGTCTTGG TTTCGATGAA
GTCGATGCGC TGACCGGCCC GAAGATCGGT CGCCCGAAGA GCGCTACCTA TCGCACCGCC
GACGTGGTGG GCCTCGATAC GCTGGCCCAC GTCGTCAAGA CCATGCAGGA CACGCTGCCC
GGCGATCCGT GGCATCAATA TTTCACCAAT CCGGCCTGGT TGCAGGCCTT GATCGCCCAA
GGCGCGCTTG GCCAGAAGAC CCGCTGCGGC ATCTTCCGCA AGCAGGGCAA GGAAATCCAG
GTGCTCGACC TGGCCAAGCA GGATTACCGC ACTTCCGCCG GTGAGGTGGC CGACGAGGTC
GCGGCCATCC TGAAGATAAG GAATCCCGCC GAGAAGTTCG CCGCCTTGCG CACCTCGGCA
CATCCGCAGG CCCAGTTCCT GTGGTCCATT TTCCGCGATG TCTTCCATTA CTGCGCCGTG
CAACTGGAAA ACGTCGCCGA CAACGCGCGC GACGTCGATT TTGCCATGCG CTGGGGCTTC
GGCTGGGCGC AGGGTCCGTT CGAAACCTGG CAGGCGGCGG GTTGGGGCGA TATTGCCCAA
AGCATTTCGG CCGATATAGC TGCCGGCAAG GCCATGGGCG ATGTGCCGCT GCCGGCCTGG
GTGGTGGAAG CCGGCCGTAC GGGCGTGCAT ACGCCGGATG GTTCGTGGTC GGCTCGTGAC
AAGGCTTATG CGCCACGTTC ATCGCTGCCG ATCTACCAGC GCCAGCTTTT CCCTGAACGT
GTTTTGGGCG AGAGCGGTGC GACCCCGGAA AAGTCCGGCG AAACCCTGTA CGAAAACGAC
GGTGTTCGCC TGTGGAAACT GCCAGCGCTC GATGCTGGGA TCGGCATCCT GTCCATCAAG
TCCAAGATGC ACACCATCGG CAATGAGGTG CTCGATGGCG TGATCGCTGC CGTGCGTCAG
GCCGAAACGA CGCTCGATGG CGTGGTCGTC TGGCACGAAG CGCCTTTTGC TGTCGGGGCC
AACCTGCAGC AAGTGGGTGA AGCCTGCGCT GCTGGTCAGT TCGATCTCCT CGAAGCCACT
GTCGAGAAGT TCCAGCGCGC TTCGCAAACC CTGAAATATG CGCAGGTGCC GGTCGTTGCT
GGAGTGCAGG GTATGGCGCT GGGCGGTGGT TGCGAGTTTG TCATGCATGC CAGCAAGCGC
GTCATGGCGC TGGAAAGCTA TGTCGGCCTC GTTGAGGCTG GCGTCGGCTT GATTCCGGCC
GGCGGCGGCT GCAAGGAATT CGCCGTGCGG GCCGCCGAGT GGGCCGCCCA GTCGGCCACC
CCGGGCGAAG TGTTCAACTT CCTGCAGCCG GTGTTCCAGA CCATCGCCAT GGCCAAGGTG
GCGAAAAGCG CTGTCGAAGT CATCGACATG GGTTTCGGCA AGCCTGCGGA CACCATCCTG
TTCAACGCCA ATGAACTGCT CTTCGTCGCC ATCAAGGAAG CTCGCGCCAT GGCTGAAGCC
GGCTACGCCC CGCCGCCGAT GGCCCGTGGT ATTCCGGTGG CCGGCAAGAA CGGTATCGCG
ACGCTGGAGA TGATGCTGGT CAACATGAAA GAGGGCGGCA TGATTTCCGC ACATGACTAT
CGTGTGGCCA AGGCTGCAGC GACCGCTTTG TGCGGTGGCG AGATCGAAAC CGGCAGCCTG
GTCGATGAGG AATGGTTGCT GACCATTGAG CGCCAGTTGT TCGTCGAATT GCTGAAGACC
CCCGAAACCC AGGCCCGGAT CAAGCACATG CTTGAAACTG GCAAGCCTCT TCGTAACTAA
 
Protein sequence
MNKLIVKKAA VLGAGVMGAQ IAAHLANANV PVVLFDLPAK EGDKNGIVKK AIDGLKKLDP 
APLASKGKLK FIDAANYDEH LPLLAECDLI IEAIAERMDW KNDLYAKIAP HIVPNAIVAS
NTSGLSMNLL AEGLPANIRP RFCGIHFFNP PRYMHLVEII STKTTDGSTL DALETWLTSR
LGKGVIRALD TPNFVANRIG VFSILAVMHH TQAFGLGFDE VDALTGPKIG RPKSATYRTA
DVVGLDTLAH VVKTMQDTLP GDPWHQYFTN PAWLQALIAQ GALGQKTRCG IFRKQGKEIQ
VLDLAKQDYR TSAGEVADEV AAILKIRNPA EKFAALRTSA HPQAQFLWSI FRDVFHYCAV
QLENVADNAR DVDFAMRWGF GWAQGPFETW QAAGWGDIAQ SISADIAAGK AMGDVPLPAW
VVEAGRTGVH TPDGSWSARD KAYAPRSSLP IYQRQLFPER VLGESGATPE KSGETLYEND
GVRLWKLPAL DAGIGILSIK SKMHTIGNEV LDGVIAAVRQ AETTLDGVVV WHEAPFAVGA
NLQQVGEACA AGQFDLLEAT VEKFQRASQT LKYAQVPVVA GVQGMALGGG CEFVMHASKR
VMALESYVGL VEAGVGLIPA GGGCKEFAVR AAEWAAQSAT PGEVFNFLQP VFQTIAMAKV
AKSAVEVIDM GFGKPADTIL FNANELLFVA IKEARAMAEA GYAPPPMARG IPVAGKNGIA
TLEMMLVNMK EGGMISAHDY RVAKAAATAL CGGEIETGSL VDEEWLLTIE RQLFVELLKT
PETQARIKHM LETGKPLRN