| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1542 |
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| Symbol | |
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| ID | 3566154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 1647123 |
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| End bp | 1650143 |
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| Gene Length | 3021 bp |
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| Protein Length | 1006 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637680010 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_284761 |
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| Protein GI | 71907174 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.101137 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAAGC AGAATGCCCG CTACGGGCAC CGATTGTGGT TTGCCCTGCT TGCTCTGGTG
GGCGGTGGCT GCGTCCTGCT CGCCTATGTT TTGTGGTCGG CCTATCAGGA TGTCTGGAGC
GAGGCCCGGT CGGTGGCGAG CAGCCAGGCA GAACTCCTTG AGGCTCGCTT CGATTCGACC
TTGCGTCGTG TCGATGTGAC GCTGGAAGAC ATGGCGGAGC GCTTTCCTGC CGAATCCTTT
TCATCAGGGG CAGTGCAACG ATACCGCACG CCCATCGAAG AGCAGTTGGA GCGTTACCAG
CATGCCTTTC CTGAAGTTGC GGGTTTCAGG ATTATCGATG TGAACGGGGA TGTCATTTAC
CGTTCGGGTG GAGGTGACTA CGCCAGTTTG GCTGATCGAT CGTATTTCCA GATACCCAAG
CAACAGTCCG GAACTGGAAT AATTTTCTCC GAGGTGATTA CCTCGCGCAT CACCGGGCGG
TCGACGATCG TCGCCGCCAG GGCTGTTCGT GCCGCTGACG GCCGTTTTCT TGGGGTAGTC
AGTGCAGCGA TCGAACTTGG TTATTTTGAA GAACTGTTCA AGGCGGTTCG CCTCAGTGCT
GCGGAGGTGT TGGTCATCCG GCGCAGCGAC GAGCAGACGG TGGTGGTCAG GCATCCGCCG
CTAGCCAAGG AGGCAAATCT ACCCCTTAGT GCATCCCACC CGATTGTGCA AAGACTTCAA
GCGGGGGAAC GCAGTGGTGT TCTTGAGTTC GTTTCGGAGT CGGATGGCAT CCGGCGGATT
TATGGCTATC GCGCCCTGGA GCGCTATCCC TTTTATGCCG CGGCTGCGCT ATCCGAGGCT
GAAGTCATGG CCACCCTGCG TCAGCGCGTG ATCTTTGTCG CCTTGCTGGG ATGCAGCATG
TTTGTCTGCC TGATCGCTGT CGTGGTTGGC CTGTACCGCT CACAGCGGCG TGAGCAACTG
GTTTCTCAAC AGTTGTTGTT GAAAGAGGAG CGCCTGACTG CAGCCCAGCG TATTGCCCAA
CTGGGTAGCT GGGAAATCCA TCTGCCCTCG ATGCACGTGA CGTGTTCGGA CGAGCTCTAC
CGGATTTTCG AATTTACCAA ACGCGAAACC GGCTATCAGT ATCAGGATTT TCTAGCGAAG
ATCCATCCCG AAGATCGCTC GGTCGTGGAT AAAACGCTTC ATGAATCCAT CGCCTCGCGG
CAGCCTGCTT CGCTGAAACA TCGATTGCTG ATGCCGGATG GCCGGGTCAA ATATGTGCTG
GAATCCTGCG AAACCGAATA CGGCAGGGAT GGAACACCGT TGCGGGTCAT TGGTACCTCG
CAGGAAGTGA CTGCCCAGCA GGAGATGCTG GCGCAGATGC AATTGCTCGC CAGCGCAGTC
CAGTATAGCG GCGAGGCGAT CCTGATTACC GATGTCAAAA ACAAGATACT TACCGTCAAT
CCGGCATTTA CCCGCCTGAC CGGCTATACC TCCGAAGAGG CTGTGGGGCG CGATCCGAGC
TTCCTGTCAG CCGGGCGCAC GATGCCCGAA GAGTATGAGC GGATGTGGAA TGGGATTGCC
GAACGAGGTT TCTGGCAGGG GGAAATCTGG GATAGGCGCA AGGATGGCGG AATTTATCCG
AAGTGGATGT CGATATCCGT TATCCGGGGC GAAGACGGGA TGATCCGCTA CCATGTCGCG
CACTTTACTG ATGTCTCGTC GGAGCGTGCC GCGGAAGAGC GCCTGCACCA TATGGCGCAC
CATGATGTGC TGACCGGCTT GCTTAACCGT CTGAGTCTCA AGGGGCGTCT GGATCAGGCG
CTGGCTGCCG CACGACGCGA CGGTTCGCGG GTGGCCGTCC TGTTCGTCGA CCTGGATCGT
TTCAAGGTAA TCAACGATAC GCTGGGGCAT CACGTCGGGG ACGAGTTGCT GATCGAAGTG
GCAAATCGTC TGCGAGATGG CGTGCGGGAC AGCGACGTGG TGGCTCGCGT TGGTGGTGAT
GAATTCGTGA TCATGCTGTC CGGTGTCGAG CACACCAGCG CGGTTGCCAT GGTTGCTGAA
AAACTGGTGT TCAGCGTTGG TCAGTCCTAT CAGATCGGGG GGTACGATCT TTATTCGACG
CCCAGTATCG GCATTGCCAT CTACCCGACC GACGGTGAGG ACGGCGATAT CCTGATGAAG
AATGCCGATG CGGCGATGTA TCACGCCAAG ATGGCTGGCC GGAACAACTT TCAGTTCTTT
GACGCGAAGA TGAACGAGGC GGCACTGGAG CGTCTTAATA CTGAGCATGC CTTGCGTCGG
GCGCTGGCCA ATCAGGAGTT TTGCCTTTAT TACCAACCGG TCATTGATCT GGCTAGCAAT
CGCGTCGCCA GCCTGGAGGC GTTGATCCGT TGGAATCATC CGGAGAAAGG CCTGTTGCTG
CCCGGTAAAT TCATCGGAAT TGCCGAAGAG ACCGGTCTGA TCCAACCTCT GGGTGAATGG
GTACTCTGGG CGGCTTGCCG ACAGCTGGCT GACTTTGCCG CAGCGGGCAT TTCCGGTATC
AAGATGGGGG TCAATATTTC GGCCATTCAG ATGCGCAATG GCAACCTGCC GCTATTGGCT
CGTGGGGTAA TCGAGGCTTA CGATATTGAT CCCCGCAACC TCATCTTCGA GATTACCGAA
TCGGTAGCCA TGGAGCAGCC AACCGAGACG GTAAGGATTC TTGACCTCCT GAATGCCATG
GGGGTTAGCG TGGCGATTGA CGACTTCGGC ACTGGCTATT CGTCCTTGAG TTATTTGCGC
ATGTTTCCGA TCAACCATCT CAAGCTGGAT CGTTCGTTTG TCGAACAGAT TGGCGAAGAG
ATCGACGGTT GTGTCATTTG CGATGCGACG ATTGGCCTGG CCCATAGTCT TGAGTTGAAG
GTGGTGGCGG AGGGGGTGGA AACCCAGGCT CAGCTTGACT ACCTGCGCAG TCGCGGCTGC
GACATGGTGC AAGGCTTCCT TTTCAGTCGA CCGGTACCGG CCGACGAAGT CCTGGCCTTC
ATTCGTCAAT ACAATTCCTG A
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| Protein sequence | MPKQNARYGH RLWFALLALV GGGCVLLAYV LWSAYQDVWS EARSVASSQA ELLEARFDST
LRRVDVTLED MAERFPAESF SSGAVQRYRT PIEEQLERYQ HAFPEVAGFR IIDVNGDVIY
RSGGGDYASL ADRSYFQIPK QQSGTGIIFS EVITSRITGR STIVAARAVR AADGRFLGVV
SAAIELGYFE ELFKAVRLSA AEVLVIRRSD EQTVVVRHPP LAKEANLPLS ASHPIVQRLQ
AGERSGVLEF VSESDGIRRI YGYRALERYP FYAAAALSEA EVMATLRQRV IFVALLGCSM
FVCLIAVVVG LYRSQRREQL VSQQLLLKEE RLTAAQRIAQ LGSWEIHLPS MHVTCSDELY
RIFEFTKRET GYQYQDFLAK IHPEDRSVVD KTLHESIASR QPASLKHRLL MPDGRVKYVL
ESCETEYGRD GTPLRVIGTS QEVTAQQEML AQMQLLASAV QYSGEAILIT DVKNKILTVN
PAFTRLTGYT SEEAVGRDPS FLSAGRTMPE EYERMWNGIA ERGFWQGEIW DRRKDGGIYP
KWMSISVIRG EDGMIRYHVA HFTDVSSERA AEERLHHMAH HDVLTGLLNR LSLKGRLDQA
LAAARRDGSR VAVLFVDLDR FKVINDTLGH HVGDELLIEV ANRLRDGVRD SDVVARVGGD
EFVIMLSGVE HTSAVAMVAE KLVFSVGQSY QIGGYDLYST PSIGIAIYPT DGEDGDILMK
NADAAMYHAK MAGRNNFQFF DAKMNEAALE RLNTEHALRR ALANQEFCLY YQPVIDLASN
RVASLEALIR WNHPEKGLLL PGKFIGIAEE TGLIQPLGEW VLWAACRQLA DFAAAGISGI
KMGVNISAIQ MRNGNLPLLA RGVIEAYDID PRNLIFEITE SVAMEQPTET VRILDLLNAM
GVSVAIDDFG TGYSSLSYLR MFPINHLKLD RSFVEQIGEE IDGCVICDAT IGLAHSLELK
VVAEGVETQA QLDYLRSRGC DMVQGFLFSR PVPADEVLAF IRQYNS
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