Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_1362 |
Symbol | |
ID | 3569143 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 1482150 |
End bp | 1484738 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637679830 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_284581 |
Protein GI | 71906994 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.525156 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000167572 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTATCAGC GGTATCGACG ACTGGTTATC AGACTAGAAC AGGCTCTTCG TACCAGCGAA GCGCGTCTGC ATTCCTTTTT TGATGCCACG CCGGACGCCT TGCTGATCAG CGATGCCCAC GGCACCATTA CCATGGCCAA CCAGCAGGTC GAGAAATTGC TTGGCTATGT GGCGGCGGAA CTGGTCGGCA AGTCGATCGA AGATCTGGTG CCGAACCGTT TCAAGGCCAG CCATCCGGTA TTACGCAGTG AGTTCACCGC TTCACCCCGG GCTCGCCGGA TGGGCAACGG CATGGCCGTC AAGGCGCGGC GAAAGGACGG CAGCGAATGT GATGTTGATG TCAGCCTGAG CCGGATTGAG ACGGACGAGG GCATGTTTTT CGCCAGCGCC TTGCGTGACA TCAGTGAGCG CAAGAGGAAA GAAGAAGAGC TGCGGCGGCA GAACGGCGTG CTCTCCACCA TCTTCCAGAG CTTCCCCGGC GGCATTACGC TGTTTGACGC GGACTTGCGC CTGGTGGCGT TCAACGACCA GTTCAAGGCC TTGCTGGACC TGCCGGATGT GCTATTCGAG CAGCCTGAGC CGGATTTTGA GACGTTGATA CGTTACAACG CCGCGCGTGG CGAATATGGC CCCGGCGACC CCGAACAACA GGTCGCCGCG ATCATCGCGA GAACCAAAAA ATTTGTTCCC CACAAAATCG AGCGGGTACG CCCCGACGGA ACCTCACTGT CGATTCGCGG TGTGCCGCTC GCTAGCGGCG GTTTTCTCTC CATCTATACC GACATCACTG ACCGAAAACA ATCCGAAGAA CAACTGCGCA TTGCCGCAGC CGCTTTCGAA TCCCAAACCT GCATGATCAT CACCGATGCG AACCGGGTGA TCCAGCGCGT TAACCGGGCC TTCATCGAGA CCACGGGTTA CTCGGCGGAG GAGGCTGTCG GCCAGACCCC GCGCCTGCTC CAGTCGGGTC GTCACGGTGC AGATTTCTAT CGTGAAATGT GGGAAACCAT CCACCGCACG GGGGCATGGC AAGGTGAAAT CTGGGGGCGG CGCAAGAACG GTGAAGTGTA TCCCAAATGG TTGTCCATCT CGGCGGTCGT TGGTACCAAT GGCAGGGTCA GCCATTACAT CGGCACCCAT AACGACATCA CAGAGCGCAA GAAGGCCGAA GAACGAATCA ACGCCCTGGC CTTCTTCGAT CAACTGACCG GCCTGCCCAA CCGGACGCTG TTACTGGATC GTTTGAAGCA AACGATACTA AGCAGTGGCC GTAGTGATAG TCACGGTGCC TTGTTGTTCA TCGACCTCGA CAACTTCAAA ACGCTCAATG ACACGCTCGG CCACGATGTG GGCGACCAGC TGCTCAAGCA AGTGGCTCTG CGCCTGACGC ACTGTGTGCG CGATGGCGAC ACGGTCGCCC GACTGGGCGG TGATGAATTC GTGGTGGTCC TCGCCAACTT GAACACCAAC GACAAAGAGG CGGCCCAGGA TACCGAAACC GTGGCCGAGA AGATTCTCGC CACGCTCAAC CAGACCTACC AACTCGGCCA TGTGACCCAC CACAGCAGCG CCAGCATCGG TGCCACCTTG TTCAAGGGGC CGCTGATTCC GATCGATGAC CTGATGAAAC AGGCCGACCT CAGCATGTAC AAGGCCAAGG CTGCAGGCCG CAATGCGGTT CGTTTCTTCG ACCCTTCGAT GGAAATCGCG GTCAAGGTAC GGGCCGAGAT GGAGGATGAC CTGCTGCGCG CCCTGGCAGA GAAACAGTTC CTGCTCCACT ACCAGGCCCA GATGGTCGGC GAGCGCCTGA CCGGTGCTGA AGTGCTGCTG CGCTGGCAGC ACCCCCAGCG CGGCATGGTT TCGCCGGCCG AGTTCATTCC GCTGGCCGAG GAAACCGGCT TGATTCTGCC CCTGGGCCAC TGGGTGCTGG AAACGGCTTG TACCCAGTTG GCGCAATGGG CGGGGCGACC GGAAGTGGCC CATCTGACCC TGGCGGTGAA TGTCAGTGCC CATCAGTTTC GCCAGAACGA CTTCGTGGAT CAGGTGCTTG GGGTTCTCGA AAAGACCGGT GCCAATCCCC AGCGCCTCAA GCTGGAGCTG ACGGAAAGCC TGCTCGTCGA GAACGTCGAA GACATTATTG ACAAGATGGC TGCACTCAAG CACCGCGGTG TGGGCTTTTC TCTCGACGAC TTCGGCACTG GCTATTCCTC GCTGTCTTAT CTGAAGCGCC TGCCACTGGA CCACTTGAAG ATTGACCAGT CCTTTGTTCG CGACGTACTC ACCGATAGCA ACGATGCCTC GATTGCCCGA ACCATCGTCG CGCTGGCCAA CAGCCTGGGG CTGGGGGTGA TCGCCGAAGG CGTTGAAACC GAAGCGCAGC GCGACTTTCT GGCCAGTTCC GGTTGCCATA CCTATCAAGG CTATTACTTC AGCCGGCCGC TACCGATCGA GGATTTCGAA TCCTTCACGT TAACGGCCAT TTGTAGCAGC TGTCCCGAGC GGACGGATCC CAAAACCTGC GGATGCAAGG CATTCGTTTC ACTCATGTCC CAACTGAAGT CTGAGAGCAT CATCACTAAT GAAAACTAA
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Protein sequence | MYQRYRRLVI RLEQALRTSE ARLHSFFDAT PDALLISDAH GTITMANQQV EKLLGYVAAE LVGKSIEDLV PNRFKASHPV LRSEFTASPR ARRMGNGMAV KARRKDGSEC DVDVSLSRIE TDEGMFFASA LRDISERKRK EEELRRQNGV LSTIFQSFPG GITLFDADLR LVAFNDQFKA LLDLPDVLFE QPEPDFETLI RYNAARGEYG PGDPEQQVAA IIARTKKFVP HKIERVRPDG TSLSIRGVPL ASGGFLSIYT DITDRKQSEE QLRIAAAAFE SQTCMIITDA NRVIQRVNRA FIETTGYSAE EAVGQTPRLL QSGRHGADFY REMWETIHRT GAWQGEIWGR RKNGEVYPKW LSISAVVGTN GRVSHYIGTH NDITERKKAE ERINALAFFD QLTGLPNRTL LLDRLKQTIL SSGRSDSHGA LLFIDLDNFK TLNDTLGHDV GDQLLKQVAL RLTHCVRDGD TVARLGGDEF VVVLANLNTN DKEAAQDTET VAEKILATLN QTYQLGHVTH HSSASIGATL FKGPLIPIDD LMKQADLSMY KAKAAGRNAV RFFDPSMEIA VKVRAEMEDD LLRALAEKQF LLHYQAQMVG ERLTGAEVLL RWQHPQRGMV SPAEFIPLAE ETGLILPLGH WVLETACTQL AQWAGRPEVA HLTLAVNVSA HQFRQNDFVD QVLGVLEKTG ANPQRLKLEL TESLLVENVE DIIDKMAALK HRGVGFSLDD FGTGYSSLSY LKRLPLDHLK IDQSFVRDVL TDSNDASIAR TIVALANSLG LGVIAEGVET EAQRDFLASS GCHTYQGYYF SRPLPIEDFE SFTLTAICSS CPERTDPKTC GCKAFVSLMS QLKSESIITN EN
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