| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1280 |
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| Symbol | rpsA |
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| ID | 3568739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 1391018 |
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| End bp | 1392697 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637679743 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_284502 |
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| Protein GI | 71906915 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.0113187 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATCTT TTGCTCAACT ATTTGAAGAA TCCCTGGCTC GCCAGGAAAT GCGTCAAGGC
GAAGTCATCA CTGCAGAAGT GGTGCTCATC GATCACAACT TCGTTGTGGT CAATGCCGGC
CTGAAATCGG AATCCTATGT TCCGCTCGAA GAATTCCTGA ATGATCAGGG CGAACTCGAA
GTCAAGGTGG GCGATTTCGT CCAAGTGGCT ATCGAAATGC TGGAAGACGG CTACGGCGCT
ACCCGCCTGT CGCGCGATCG CGCCAAGCGC ATCGCAGCCT GGAACTTCCT GGAAGAAGCC
CTCAACAACA ACTCCCTCGT TACCGGCACC ATCACCGGTA AGGTCAAGGG CGGCCTGACC
GTCATGTCCA ACGGCGTCCG TGCATTCCTG CCGGGTTCCC TGGTCGACAT GCGTCCGGTC
AAGGACACCA CCCCGTACGA AGGCAAGACC CTTGAATTCA AGGTCATCAA GCTGGATCGC
AAGCGCAACA ACGTCGTGAT GTCCCGCCGT GCCGTGCTCG AAGCTACCGC CGACAAAGAT
CGCGAAAAGC TGCTTGAGAA CCTCAAGGAA GGCACCACCG TCAAGGGTAT CGTCAAGAAC
ATCACCGATT ACGGCGCATT CGTCGACCTC GGCGGTATCG ATGGCCTGCT GCACATTACC
GACCTGGCCT GGCGCCGTGT CCGTCACCCG AGCGAAGTGC TCAATGTTGG TGACGAAGTT
ACCGCCAAGA TCCTCAAGTT CGACGCCGAG AAGAACCGCG TCTCCCTGGG GATGAAGCAA
CTGGGCGACG ATCCGTGGGT TGGTATTGCC CGCCGTTACC CGGCCGGTAC CCGCCTGTTC
GGCAAGGTCA CCAACCTGAC CGACTACGGT TCATTCGTTG AAATCGAACA AGGCATCGAA
GGCCTGGTTC ACGTCTCCGA AATGGACTGG ACGAACAAGA ACGTTCATCC GTCCAAGGTT
GTCCAGCTCG GCGACGAAGT CGAAGTCATG ATCCTTGAGA TTGACGAAGA GCGTCGTCGT
ATTTCCCTGG GTATGAAGCA GTGCCAAGCC AATCCTTGGG ACGACTTTGC GATGAACCAC
AAGAAGGGTG ACAAGGTTAA GGGCGCCATC AAGTCGATCA CCGACTTTGG CATCTTCATC
GGTCTGCCTG GTGGCATCGA TGGCCTGGTT CACCTGTCCG ACCTGTCCTG GTCTGCGACC
GGCGAAGAAG CCATCCGCAA CTTCAAGAAG GGCGACGAAG TCGAGGCAGT CGTACTCGGT
ATCGACGTCG AGAAGGAGCG TATCTCCCTT GGCATCAAGC AGCTCGAAGG CGATCCGTAC
ACCAACTTCA TCGCTACCCA TGAAAAGAAC AGCATTGTGA ACTGCACCGT CAAGTCGGTT
GACGCTCGCG GTGCCGTGCT GACCCTGGAC GGCGAGAACG AAGGTTACCT GCGCGCTTCC
GAATTCTCGC GTGATCGTAT CGACGACCTG TCGCAGCACC TGAAGGTGGG CGATACCGTT
GAAGCCATGA TCATCAATGT GGATCGCAAG ACCCGTGGTA TCAATCTTTC CATCAAGGCT
AAGGACAATG CCGAACAGCA CGAAGCCATG CAGAAGTTGT CTGCAGAGTC TTCCGCCGCT
GCTTCTGGTA CGACCAACCT GGGTGCCCTG CTGAAGGCCA AGCTCAACCA GCAAGGCTGA
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| Protein sequence | MESFAQLFEE SLARQEMRQG EVITAEVVLI DHNFVVVNAG LKSESYVPLE EFLNDQGELE
VKVGDFVQVA IEMLEDGYGA TRLSRDRAKR IAAWNFLEEA LNNNSLVTGT ITGKVKGGLT
VMSNGVRAFL PGSLVDMRPV KDTTPYEGKT LEFKVIKLDR KRNNVVMSRR AVLEATADKD
REKLLENLKE GTTVKGIVKN ITDYGAFVDL GGIDGLLHIT DLAWRRVRHP SEVLNVGDEV
TAKILKFDAE KNRVSLGMKQ LGDDPWVGIA RRYPAGTRLF GKVTNLTDYG SFVEIEQGIE
GLVHVSEMDW TNKNVHPSKV VQLGDEVEVM ILEIDEERRR ISLGMKQCQA NPWDDFAMNH
KKGDKVKGAI KSITDFGIFI GLPGGIDGLV HLSDLSWSAT GEEAIRNFKK GDEVEAVVLG
IDVEKERISL GIKQLEGDPY TNFIATHEKN SIVNCTVKSV DARGAVLTLD GENEGYLRAS
EFSRDRIDDL SQHLKVGDTV EAMIINVDRK TRGINLSIKA KDNAEQHEAM QKLSAESSAA
ASGTTNLGAL LKAKLNQQG
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