Gene Daro_1176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1176 
Symbol 
ID3569302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp1280506 
End bp1281795 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content62% 
IMG OID637679643 
ProductOuter membrane efflux protein 
Protein accessionYP_284402 
Protein GI71906815 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones58 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGGTT TGCGACAGCT TCCTTCCGCT ACTGTGCCGG CCGTGAAATC CAGACATTCC 
ATTGCGCTCA TTTTTCTTCT CGCCCTGGGT AGCCGCGCTG TCTATGCGGA TGCCTTGCCT
TTGCTTACCC TGCATTTGTC GGAGGCCGAG CAGATGGTCG AGCAGCGCAA CCGGGCATTG
ATCAGCGCCC GGCGTGCCAC AGCCGCGGGC GAGGCCGTGG TCGACATGGC TGGCGCCCGA
CCGAATCCAG TTGTCTCTCT GAATACCAGC GGCTTCAATA GCCGGAGTAG CGGTAGCGGT
GGAAATCTAG ATACCACCCT GCGCATTGAT CAACCGATCG AGCGCGGCAA CAAGCGCGGC
CTGCGCTTGG CGGTAGCCGA CTCGCTGCTC CAGGCCAACC GTTCCGATGA ATCCGACAGT
CTGCGTCAGC AACGTCTGCT GGCTCGCCTG GCCTACTTTG ATCTGAAAGC AGCCGAAGAT
AAATTGCGCT TGGCCAACGA ATCGGCGCAG CTTGCCCGCC AGATACTGGC CAAGGCTGAT
TTGCGTCTTC GGGCGGGTGA TTTGTCGGCG GCTGATGTGG CGCGCATCCG TACGGATACC
CTCAAAATCG AGAGTGATGC GGTCCAGGCA CAGGTCGATC TTCGTCGCTC GCGCCTCGCC
TTGGCACAGT TGCTAGCCAT GGAAAAAGAG GCTGCCCGAT TGGCCACGGC GGATCCCTGG
CCTGCCTTCT CGCGCTTGGC GATCACGACG CCGGAAATCG AAATGCGGCC CGATGTCATT
GCGGCCCGTC AGCGGCTGGA GGCGGCAGAG CGTTCGATCC AGCTGGCCAA GGCGCAACAG
GTGCGCGATG TGACGCTGGG CGCTCAGGTC GAACGGGCTC CCGATGACCG GAATCGTTCA
GTTTATGGCG TCGGCGTCAG CGTTCCGTTG TTTACAGGCT ACGACTATCG CGGCGAAATC
CGCCGAGCCC ATGTCGATCG CGATTCCGCC CTCGATGAAC TCGAACGCGT CCGGGCGACC
GCTGCCGCCG AGTTTGAACA ATTTACCTTC GAGGCCGAGC GGATGAGCGA ACGGGCGCGC
AGCCTGCAGG ACGAGGCCTT GCCTGCCGCA CGCAAAGCGC ATGCCGCGGT TGTTCTTGCC
TTCAATCACG GTGCGGCATC GGCGCTCGAT GTCATCGATG CCCGCCGCAG CCTTTTTGCC
ATCGAAACCG ACACCACCAA CGCCCTGGCC GATGCGGCCA AGGCCCGAGC CGCCTGGGCG
GCTGCCACCA ATCGCCCGGA TCTGCCATGA
 
Protein sequence
MSGLRQLPSA TVPAVKSRHS IALIFLLALG SRAVYADALP LLTLHLSEAE QMVEQRNRAL 
ISARRATAAG EAVVDMAGAR PNPVVSLNTS GFNSRSSGSG GNLDTTLRID QPIERGNKRG
LRLAVADSLL QANRSDESDS LRQQRLLARL AYFDLKAAED KLRLANESAQ LARQILAKAD
LRLRAGDLSA ADVARIRTDT LKIESDAVQA QVDLRRSRLA LAQLLAMEKE AARLATADPW
PAFSRLAITT PEIEMRPDVI AARQRLEAAE RSIQLAKAQQ VRDVTLGAQV ERAPDDRNRS
VYGVGVSVPL FTGYDYRGEI RRAHVDRDSA LDELERVRAT AAAEFEQFTF EAERMSERAR
SLQDEALPAA RKAHAAVVLA FNHGAASALD VIDARRSLFA IETDTTNALA DAAKARAAWA
AATNRPDLP