| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1116 |
|---|
| Symbol | |
|---|
| ID | 3570011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 1218503 |
|---|
| End bp | 1219141 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637679578 |
|---|
| Product | TonB, C-terminal |
|---|
| Protein accession | YP_284342 |
|---|
| Protein GI | 71906755 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 64 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.117664 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACG TCCTTTCCCG ACCTTCTTCA GCCCAGCGCA GCGGCTTGCT CGGCATTGTG
ATCGGTGCTC ACATTGCGGT CTTCCTGCTG GTTATCGCGG CCAGAACGGT CGTGCCACAG
ATCATGGAAA TACCGCTGGT TGTCGATCTG CTTGAACCGG CTCCGGTCGC CCAGAAACAA
CCTGAAGCAA AAGCGCCGCC CATTGCCAAG CCACAGCCGA TCCGTCAGTC AGCGCCAAAG
ATACCGGCAC CAGTGATCGA AGCCACCCAG AGCAATGCTC CAGCCCCGTC GGCCCCTGTA
GCAACGCTGC CCGACGTCAA ACCAGCCCCG CCAGTCGCAC CGGTTGCCGA GGCAATCAGC
CAGGCACGTT TCGATGCCGA CTACCTGCGC AACCCTGCCC CACCCTACCC GCCACTCTCC
CGCCGCATGG GCGAAGAAGG CAAGGTCATC TTGCGCGTCT CGGTCAATCC GCAAGGTGCC
GCCGACAGCG TTGAGGTCAA GACCTCCTCC GGCAGCCAGC GCCTTGACGA TTCGGCCCAG
AAGACCGTGC GCAACTGGAA ATTTGTGCCA GCCAAACGAG GCGACACCGC CATCCAGAGC
TGGGTACTGG TGCCCATCAT TTTCAAATTG GAGCAATAA
|
|---|
| Protein sequence | MSYVLSRPSS AQRSGLLGIV IGAHIAVFLL VIAARTVVPQ IMEIPLVVDL LEPAPVAQKQ
PEAKAPPIAK PQPIRQSAPK IPAPVIEATQ SNAPAPSAPV ATLPDVKPAP PVAPVAEAIS
QARFDADYLR NPAPPYPPLS RRMGEEGKVI LRVSVNPQGA ADSVEVKTSS GSQRLDDSAQ
KTVRNWKFVP AKRGDTAIQS WVLVPIIFKL EQ
|
|---|
| |