| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0971 |
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| Symbol | |
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| ID | 3570286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 1055849 |
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| End bp | 1059412 |
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| Gene Length | 3564 bp |
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| Protein Length | 1187 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637679430 |
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| Product | PAS |
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| Protein accession | YP_284197 |
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| Protein GI | 71906610 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.875405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATCCTA GGAACATCCT CATTTTCCTG CGCTACTTCG TGCCGCTGGC CGGATTCATC
CTGCTCGTCA CGGTTTTCTA CGCCGACAGT CATCGCGACG CCGAGCGCAG CCACCTCGAA
GCGGATGAAC TGCTCAATGT CCGTCTGGGT GCTGGCGCGC TGGACCGCCG CCTGCTGATC
ATCGTCCGCG ATCTGCGCAT CGTTGCCGCC GGCAGCGCAC TGAAACGCTT TACGGAAGAT
GGCGACGCTC TTGAGATCAA CCGGATCGCC GAAGATTTTC TGGGCTTTTC CGGGGCCCGA
AGCGGCTACA GCCAACTGCG CCTGCTCGAC CTCACCGGCC AGGAAATCGT GCGCATCGAC
CACGACGGCA AACAAGCCCG GATCGCCGAC CGGGCACAGT TGAAAAACAA GGCTGACCGC
TATTATTTTC GTGACAGCAT CGGCCTGCCG CCGGGCGCCA TCTACCTTTC TCCGCTCGAT
CTCAACATCG AGAACGGCCG GGTCGAAACC CCGTACAACC CGACCCTGCG CATTGCTACC
CCCCTGGCCG ACAGCCAGGG CAAAACACGT GCCCTGCTCG TCCTGAACTA CCGCGCCAGC
GAAATGATTG GCTACGTTGC TGATGTCACG ACCCAGGCTG CCGATCACCT GATGATCGTC
AATCAGGAAG GCTATTTCCT GCACGCCCCC AATCCCGCCG ACGAGTGGGG TTTCATGTTC
GACAAGCCGG AGTTGAGCCT GCCCCATCGC TTCCCGGCCA GCTGGGCGAC CATTCAGAAA
ACCGAACAAG GGCAGTTCTC CGATAGCGCC GGCTTATGGA CCGTTGCCAC CGCCTATTCG
GCGCGTGGCC GCCAGGACAA GGCAGACCAG GAAAACTGGA GCATGGCGCA AGAGCAAGCA
TGGAAGGTGG TCGCTCACGT TCCGCCCGAG GCCGTGCCCG GCATGTTCGC TGGCTGGAAT
GCCACTTTCT TCGCCATCGA GGCGCTGCTG CTCGGCCTGG CGGCTGCGGT GGCGGCCTAT
ATGGCAGGCA GCACACGCCA GAAACGGGAG GCTGAAACCC GCTTCCGCAT CTATTTCGAG
CGGGCCATGG TCGGCATGTC GATTAACGAT GCAAACAAGC GCTGGATCGT CGTCAATCCG
GCACTTTGCC AGATTCTCGG CTATTCCGCG GAAGAACTGC TGGGCAAGAG CTGGACGGAA
TTGACTCATC CTGATGACTT GCCGGCCAGC CTGGCCGCCT TCGACGACAT CGTGCGCGGC
GAGGTCGATG GCTTTGAAAT CGAAAAACGC TATCTGCGGG CGGACGGCGC AACCATCGCC
GCCCGCGTCG CCGCTCAGGC CATCCGCAAG CCAGACGGCC GCGTGGACTC GATATTGACC
ATCGTCGAGG ATATCAGCGC CCGTGTCGCG GCCGAAAAAG CAGTGCGCGC CAGCGAGGAA
CGCCTGCGCC GATTGGGCGA CAATCTGCCT GACAGCTACC TTTATCAATG CTGCACCGGC
CCGGATGGCC ACCTCCAATT TACCTATCTG AGCTCCGGGG TCGAGCCGAT TCACGGCCTG
ACGCCCGAGG AAATCATGGC CCATCCGGAA CGCCTGTTCG CCGATGTCGA CCCGGCGCAC
CTGCCCGGAC TGTTGCAGGC CATCGCCGAC AGCGAGCGCC AGCAAACCGA TTTTGTGTCC
GAGTTGCGCC TGCGCAAGCC GGACGGCCAG TGGCGCTGGC TGCAGATTCG CTCCCGCCCG
CGGCGCTCGC CGAGCGGGAA AACCGAGTGG GACGGCGTCG CCACCGACGT TACGGCGCGG
CGCGAAAACG AAACATTGCT CGACCTGCAA TCCAGGCGCG CCCATGCCCT GCTCGAATTG
CCCTGGCAGC GCAAGCAAAT GGATGAACCT CACTTCCTGC GCCACGTCAT CGCTTCCATT
GCGCAAATCA CCGACAGTGC TGGCGGCTTC ATCTATTTTG TCGGTGATGA CTGCACGGAC
CTCGCCCTGG CCGCCTGCTG GCCCGCGACC GACGGCGCCG ACAACTGGCA GTGCCGGATG
AGCGAAGCCG GGCAATGGGC TGACGCCATC CGCCTGCGCC AGCCTATCCT GATCGATGAC
TACCCCGCCG AGGAACGAGA TCGCCGACGG CCAAACGACC TCGGCCTGTC GCGCCTGGCC
AGCGTGCCAG TCTATGGCGA AAACGGAATT CAGCTTCTGG CCTGCCTGAT CGACAAGCCA
GAGCCGTACT CGCTGCAGGA TATCGAAACC ATCCAGCTGA TTGCCAGCGA TGCCTGGCGT
ATCGCCAGCC AGCAGCGCGC CGAGCAGGCC TTGCGCATTG CCATGCAGGT GGTCAATGCC
AGCCCGGTCA TCTGTTTCCG CTGGCAGGCG ACAGGCGGCT GGCCGGTCGT TTTTGTATCC
GACAATGTCA CCAATTGGGG CTACACCGTC GCCGACCTGA TCGCCGGAAA CCCGGCCTTT
GCCGACATGG TGCATCCGGA TGACCTGTCC CGGGTCGTCG AGGAAGTGAC CCGCTACACT
GCCGAAGGGC GCACCGACTA TATCCAGGAA TACCGCTTGC TGACCGGCGA CGGACGAGTC
ATCTGGATTT CCGACCGGAC CCAGGTATTG CGCAATGCCA GTGGCGGTGC CGAGTTCTAC
GATGGCGTGC TGACCGACAT CACCGAGCGC CACACCCAGA CCGAAGAACT GACCACCACG
CTCGCCGCCC AGCGCCAATT GAACAAACGC CTGGAGGAAG CGCACAACCA GTTGCTGCAA
TCGGAAAAAA TGGCCTCCAT CGGCCAACTG GCTGCCGGCA TCGCGCACGA ACTGAACAAT
CCGATCGGCT TTGTGCATTC CAATCTGGGT ACGCTGGAGA GCTATTTGCG CGACCTGATG
GAAATCATTG ATGCCTACGA CAAGGGCCTG GCCGACGATA CCGACCTGGC GGCGCAACGG
ACCGCCATCG CCCGCCTGCG CGAGGAGCGC GACTTTGCCT ACGTCCGTGG CGACATCATC
CAGTTGCTCA GCGAATCGAA AGATGGCCTG AGCCGCGTTC GCAAGATCGT CCAGGACTTG
AAAACCTTCT CGCATGTCAG CGAACAGGAA TGGCAGTGGA CCGACCTGCA TCAGGGCCTG
GACTCAACCC TCAACATCGT CTGGAACGAA CTCAAGTACA AGTGCCAGGT GGTAAAGGAG
TACGGCGATA TTCCCAAGAT CCATTGCCTG ATCTCGCAGC TCAACCAGGT TTTCATGAAT
CTGCTGGTCA ATGCCGGCCA CGCCATCGAG ACGCGGGGCA CGATCACCAT CCGCACCCGT
CGCCAGGGCG ACGACGCGGT GTGCATCGAA ATTTCCGATA CCGGCAAGGG CATCGCCCCC
GAACACCTGT CGCGTATATT TGAACCCTTC TTCACCACCA AGCCGGTCGG CAAGGGCACT
GGCCTCGGCC TGTCGCTCTC TTATGGCATT ATCGACAAGC ATCACGGTCG CATCGAGGTC
GACAGTCAGC TCGGTGTCGG CTCGACCTTC CGCATCATTC TTCCCATCAA TCAGAAAAAC
AGCCCACCGG AGACTTCGCG ATGA
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| Protein sequence | MNPRNILIFL RYFVPLAGFI LLVTVFYADS HRDAERSHLE ADELLNVRLG AGALDRRLLI
IVRDLRIVAA GSALKRFTED GDALEINRIA EDFLGFSGAR SGYSQLRLLD LTGQEIVRID
HDGKQARIAD RAQLKNKADR YYFRDSIGLP PGAIYLSPLD LNIENGRVET PYNPTLRIAT
PLADSQGKTR ALLVLNYRAS EMIGYVADVT TQAADHLMIV NQEGYFLHAP NPADEWGFMF
DKPELSLPHR FPASWATIQK TEQGQFSDSA GLWTVATAYS ARGRQDKADQ ENWSMAQEQA
WKVVAHVPPE AVPGMFAGWN ATFFAIEALL LGLAAAVAAY MAGSTRQKRE AETRFRIYFE
RAMVGMSIND ANKRWIVVNP ALCQILGYSA EELLGKSWTE LTHPDDLPAS LAAFDDIVRG
EVDGFEIEKR YLRADGATIA ARVAAQAIRK PDGRVDSILT IVEDISARVA AEKAVRASEE
RLRRLGDNLP DSYLYQCCTG PDGHLQFTYL SSGVEPIHGL TPEEIMAHPE RLFADVDPAH
LPGLLQAIAD SERQQTDFVS ELRLRKPDGQ WRWLQIRSRP RRSPSGKTEW DGVATDVTAR
RENETLLDLQ SRRAHALLEL PWQRKQMDEP HFLRHVIASI AQITDSAGGF IYFVGDDCTD
LALAACWPAT DGADNWQCRM SEAGQWADAI RLRQPILIDD YPAEERDRRR PNDLGLSRLA
SVPVYGENGI QLLACLIDKP EPYSLQDIET IQLIASDAWR IASQQRAEQA LRIAMQVVNA
SPVICFRWQA TGGWPVVFVS DNVTNWGYTV ADLIAGNPAF ADMVHPDDLS RVVEEVTRYT
AEGRTDYIQE YRLLTGDGRV IWISDRTQVL RNASGGAEFY DGVLTDITER HTQTEELTTT
LAAQRQLNKR LEEAHNQLLQ SEKMASIGQL AAGIAHELNN PIGFVHSNLG TLESYLRDLM
EIIDAYDKGL ADDTDLAAQR TAIARLREER DFAYVRGDII QLLSESKDGL SRVRKIVQDL
KTFSHVSEQE WQWTDLHQGL DSTLNIVWNE LKYKCQVVKE YGDIPKIHCL ISQLNQVFMN
LLVNAGHAIE TRGTITIRTR RQGDDAVCIE ISDTGKGIAP EHLSRIFEPF FTTKPVGKGT
GLGLSLSYGI IDKHHGRIEV DSQLGVGSTF RIILPINQKN SPPETSR
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