| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0913 |
|---|
| Symbol | |
|---|
| ID | 3570070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 988567 |
|---|
| End bp | 990420 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637679371 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_284139 |
|---|
| Protein GI | 71906552 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 0.631203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCCAT CCTCCCTGAA AACTGAGCAA ACCGCCTTGG CCACTGCTGC AAACGCTTTG
AACGTCCTGC GCGACGTCTT CGGCTACCCC GCCTTCCGTG GCGAACAGGC GGAGATTATC
GGCCACGTCG CCAGTGGTGG CGATGCACTG GTGCTGATGC CGACCGGCGG CGGCAAGAGC
CTGTGTTACC AGATTCCCGC GCTGCTCCGC CCCGGCTGTG CCGTCGTCGT TTCGCCGCTG
ATCGCGCTGA TGCAGGATCA GGTCGATGCG ATGATCCAGC TTGGCGTCAA GGCCGCCTGC
CTGAATTCGA CCCTCGACTG GCGCGAGGCC CAGGCGGTTG AGCAGGCCAT CTTCAGCGGC
AATCTCGACC TCGTCTATAT CGCCCCCGAA CGCCTGCTGC TCGACCGCAC GCTGGCCATG
CTCGATTCCC TGTCCGAAGC CGGCAAGCTG GCGCTGTTCG CCATTGACGA AGCCCATTGC
GTCTCGCAAT GGGGCCACGA TTTCCGGCCG GAATACCTGC AACTGTCGGC GCTGCACGAG
CGTTATCCGG CCGTACCACG CATCGCCCTG ACCGCCACCG CCGACCAGGC GACGCGCAAC
GAGATCCTGC AGCGGCTGGG CCTTGGTGAA GCGCGCGTTT TCCTGTCCAG CTTCGACCGC
CCGAACATTC GCTACACGGT GGTCGAGAAG GACAACGCCA AGAAGCAACT GCTCACTTTC
CTGACCGGCC GCAAGGGCCA GGCCGGTATC GTCTATTGCC TGTCGCGCAA GAAGGTCGAG
GAAACGGCCG AATGGCTGTC GACCCAAGGC TACCCGGCTC TGCCTTATCA CGCTGGCCTG
CCGGCGCCCG AACGCGCCGC CAACCAACGC CGCTTCCTGC GCGAGGAAGG CCTGATCATG
TGCGCCACGA TCGCTTTCGG CATGGGCATC GACAAGCCGG ATGTCCGCTT CGTCGCCCAC
CTCGATTTGC CGAAGAGCAT CGAAGCCTAT TACCAGGAAA CCGGTCGTGC CGGCCGCGAT
GGCGAACCAT CGGAGGCCTG GATGACCTAC GGCATGCAGG ACGTCGCGCT GCAGCACGCG
CGGATCGCCG AATCAGGCGC CGCCGAGGGC CAGAAGATCC TCGAATCGCA GCGCCTGACT
GCCCTGCTCT CTTACTGCGA AGCGCCGCGC TGTCGGCGCC AGGTGCTGCT CAATTACTTC
GGCGAAGAGC GCGAGCCCTG CGGCAACTGC GACGTATGCA CCGAACCGCC GGAATTGTGG
GATGGCACGC AGGCCGCGCA AAAAGCGCTG TCAGCCATTT TCCGTACCGG CATGCGCTTC
GGTGTCACCC ACCTGACCGA CATCCTGCGC GGCAAGGCGA CGGACAAGGT CAAGCAGTGG
AATCATGACC AGTTGCCGAC CTTCGGCGTC GGCGGCGATC TCGACGACCA CGCCTGGAAA
AGCGTTTTCC GGCAACTGGC CGCAGCGGGA CTGGTCCATG TCGACATGGC CGAGCATGGC
GCGCTGCAAC TGACTGAAAC GGCGCGCGAA GTGCTCAAGG GACAACGCAC AGTGCAACTG
CGCCGCCCGG TCAAACGCAA ATCGACACCC TCCCGGTCGT CGAGCAGCAC GGTCGTCAGC
GATCTGTCGC CGGCCGATGA CGCGCTGTTC CAGCTGCTGC GCAAATGGCG GGCCGATACG
GCCAGAGAGC AGGCAGTACC GGCCTATGTC ATCCTGCACG ACAAGACCCT GCGCGAACTG
GCCGAGGTCC GCCCGGTCAG TCATGGCTTG CTGGCCGGCA TTACCGGCAT GGGCAGCGCC
AAGATCGAAC ATTACGGGGC AGAATTGCTT GAATTGATTC GTAACGAGGG CTGA
|
|---|
| Protein sequence | MKPSSLKTEQ TALATAANAL NVLRDVFGYP AFRGEQAEII GHVASGGDAL VLMPTGGGKS
LCYQIPALLR PGCAVVVSPL IALMQDQVDA MIQLGVKAAC LNSTLDWREA QAVEQAIFSG
NLDLVYIAPE RLLLDRTLAM LDSLSEAGKL ALFAIDEAHC VSQWGHDFRP EYLQLSALHE
RYPAVPRIAL TATADQATRN EILQRLGLGE ARVFLSSFDR PNIRYTVVEK DNAKKQLLTF
LTGRKGQAGI VYCLSRKKVE ETAEWLSTQG YPALPYHAGL PAPERAANQR RFLREEGLIM
CATIAFGMGI DKPDVRFVAH LDLPKSIEAY YQETGRAGRD GEPSEAWMTY GMQDVALQHA
RIAESGAAEG QKILESQRLT ALLSYCEAPR CRRQVLLNYF GEEREPCGNC DVCTEPPELW
DGTQAAQKAL SAIFRTGMRF GVTHLTDILR GKATDKVKQW NHDQLPTFGV GGDLDDHAWK
SVFRQLAAAG LVHVDMAEHG ALQLTETARE VLKGQRTVQL RRPVKRKSTP SRSSSSTVVS
DLSPADDALF QLLRKWRADT AREQAVPAYV ILHDKTLREL AEVRPVSHGL LAGITGMGSA
KIEHYGAELL ELIRNEG
|
|---|
| |