Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0893 |
Symbol | |
ID | 3569995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 965404 |
End bp | 967161 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637679351 |
Product | type II and III secretion system secretin |
Protein accession | YP_284119 |
Protein GI | 71906532 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
Num covering plasmid clones | 48 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAGA TTTCGATAGT CGCTATGTCG GCACTTTTGC TGGCCGCGTG CAGCAACCAG TATTCGCATC GGGGAGATGC GTTCGAACGG GCCGGTCAGG AAATCGGTGC CGCCGCTGCC GGCAAGACGA ACCGCTCGCA AGGCGATGTC GTCGGCCAGG CCATGGTGCC ACCACTGCAA CTGGAGCAGC CGGTTGCTGC CAAGCCGGAG CCTCGTTTCA ATCTGGCGGT CAATAATGCC CCGGTTGGAC AGGTACTGAA TGCCCTGGTT TCCGGTACGC CTTACAGCAT GCTTTTCCCG CCCGAACTGT CGGGCACGGT CAGCCTGAAT CTGAAGAACA CGACGGTGCG CGAGGCGCTC GATACCCTGC GCGATGTCTA TGGTTACGAT TACCGTTTCC AGGGCAACCG GATTTACGTG CAGCCCAATA CCATCCAGAC CCGGATATTC AAGATCAATT ATCTGGCGAG TCGTCGGCAG GGCATGAGCG ACATGCGGGT GACCGGCAGC TCACCGACAA CCTCGAACCC CGGCATGGGC AGCGGGGCAG CTTCCGGGCA GCAGCTAAGT GGCAGTGCCT CGGGGACGAC GGGCGGAACG ACCAGCTCGT CGGCACAGCG CATCGTCGAC AGCGCCCGTG TCCAGACGAG TTCGGATTTT GATTTCTGGA AAGATCTGAC CTTGGCACTG ACGACGATTG TCGGTCACCA GGACGGCCGC AATGTGATCG TCAATCCAGG CTCCGGGGTC GTGCTGGTCA AAGCAACGCC AGTCGAGCTG CGGGGGGTCG ACGAATATCT GAAGGCGACC CAGCTGGTGG TCGAGCGACA GGTAATGCTG GAGGCGAAGA TCATCGAGGT CTCGCTGAAC GACTCGTACC AGACCGGCAT CAACTGGAGC AAGTTCGGTG GCATCGCCAA TCGCTTCTCT CTCGGGATCG CTGCCCCGAG TGCGACCCTG GCCGGCTCCG GGGTGATCAG CGGTTCTGCC GCCGGTGTTT CCGGCGGCAC TGCGGTGGCT GCTGTACCGG GCAGTGGCGG CGCCATGGCT ACGGGGCCGA CGGGGCGTGG TTTCTTCGGC CTGACCTTCC AGTCCAATAA TTTTGCGGCG CTGCTTTCCT TCCTCGAGGG GCAGGGTGAC GTTCAGGTGC TGTCCAGCCC GCGTATTGCG ACGACCAATA ACCAGAAGGC CGTGCTCAAG GTGGGGACGG ACGATTACTT CGTGACCGGG ATTAGCACCA ATGTGACGAC CGGCACCGGT ACCGGCGGCA ATGTCGTGAC TCCGAATATC ACCCTGCAAC CATTTTTCTC CGGTATCTCG CTCGATGTGA CGCCGCAGAT CGACGATGAG GGCAACATCA TCCTGCACGT GCATCCGTCT GTCAGCGTGG TCGAGGAAAA GAGCAAGAGC GTCAATCTTG GCGACCTCGG AACCTACACG CTGCCGCTGG CATCGAGCAC GATCAACGAG AGCGACAGCA TCGTCCGCGT CCAGGACGGC AGTATTGTCG CCATCGGCGG ACTGATGAGC CAGGAACAGA ATACCAACCG CTACGGTCTG CCGGGGATCA GCGGCGTGCC CGGGCTTGGT CTGTTGTTCG GTCAGAAGAG TGTTTCCAAT CGCAAGCGCG AATTGGTCAT CCTGATGAAA TCGACAGTCA TTCGGGGCGA GAATTCCTGG CGCGATGTGG CCGGCGATGC CCAGGACCGT CTGCAGGCGC TCGACCCGCG GCAGCAACGC CACATCGAGT GGCAATGA
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Protein sequence | MSKISIVAMS ALLLAACSNQ YSHRGDAFER AGQEIGAAAA GKTNRSQGDV VGQAMVPPLQ LEQPVAAKPE PRFNLAVNNA PVGQVLNALV SGTPYSMLFP PELSGTVSLN LKNTTVREAL DTLRDVYGYD YRFQGNRIYV QPNTIQTRIF KINYLASRRQ GMSDMRVTGS SPTTSNPGMG SGAASGQQLS GSASGTTGGT TSSSAQRIVD SARVQTSSDF DFWKDLTLAL TTIVGHQDGR NVIVNPGSGV VLVKATPVEL RGVDEYLKAT QLVVERQVML EAKIIEVSLN DSYQTGINWS KFGGIANRFS LGIAAPSATL AGSGVISGSA AGVSGGTAVA AVPGSGGAMA TGPTGRGFFG LTFQSNNFAA LLSFLEGQGD VQVLSSPRIA TTNNQKAVLK VGTDDYFVTG ISTNVTTGTG TGGNVVTPNI TLQPFFSGIS LDVTPQIDDE GNIILHVHPS VSVVEEKSKS VNLGDLGTYT LPLASSTINE SDSIVRVQDG SIVAIGGLMS QEQNTNRYGL PGISGVPGLG LLFGQKSVSN RKRELVILMK STVIRGENSW RDVAGDAQDR LQALDPRQQR HIEWQ
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