| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0787 |
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| Symbol | |
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| ID | 3569286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 854055 |
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| End bp | 855812 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637679236 |
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| Product | GGDEF |
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| Protein accession | YP_284013 |
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| Protein GI | 71906426 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 0.109099 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00379197 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCACAC TCACCAACCC TTTCGAAATC GCCCGGGAGA CATTGCGCCT GCTGGCAACC
CGAAGAATCC CCCCCTCTCC GGACAACTAT CTCACCCTCT ACCACGAGAT TGCCGGCACA
AAACCAACCG AAAATTCGTT TCCCGAATCT CAACTACGCT CGCTGGCAGC AGCCTTACCG
AAAGCATCAC CAGATCAGCT TCGCCTGGCC CGGCAATTGG ACGAGGCTGT CAAGGCAGCC
AACTGGGAGG ACTTTAAAAA GGCACTGACT GATTTCATCT CAGCCCTCGC TGAATCGCAA
AAACTGAGTT GGTCTGAACT CATTACTGAC TTGCTGCGCC AGTGGGATGC CAAGCACCCA
GGGCTGACCG CTGCCCGAAA ACGCGAATCA CTGGAACATA TACTGACCAG TAGCGGCGCC
AATCCGGATA TCCTGTTCAA CCGACTGCAA AGCCTTTTGC GCGCATGGGG TCACGGCAAG
GAGACAGAGG CCGCCTCCCT GTCCGAAGAA GCAGCCTCGG AGACAACCCC AACACGCGCA
TTAACCGCAG CAACGAGTGA TCTGCTACCT GAATTACGCA AGCTGTTTGC CTTTACCCTC
GAAACCGCCA TCGCCACCCA GTTACTCGAA AGCCCCCAAC TCTCGAGCGA TGCAAAAGTA
CTGGCTAACG ACATCCGTAC TGCCGTCAGC CCGGCACAGT TGCAGGAATT CCTCACTCGC
CTCAAGCGCT TTGCTTTCAA ACTTGAATTG CTCGCCGAAG ACCAGGCCGA GCTACGCCAC
AGTCTCCTTA ACCTGCTCCG CCTGCTCGTT GGCAACATCA CAGAACTCGT CCTCGATGAC
CACTGGCTGC ACGGACAAAT CGCCGTCGTG CGTGAAATCA TCGACAAGCC GCTCTCCCAG
CGCGCCCTCG ACGATGCTGA AAGCCGCCTG AAAGAAGTAC TGTTCAAGCA GGCACAACTC
AAGGCCAGCC TGTCCGAAGC CCGCGACGCC ATCAAGCACA TGCTCGCCGG CTTTGTCGAC
CATCTGGCCG ACTTCGCAGA CGCCACCTCC GACTACCACG ACAAGATTGA AAGTTGCGCT
GAAAAAATCA GTTCATCCAA AGACATCACC GAACTGGAAG ACGTCCTTGG CGAAGTCATG
CGGGAAACAC GCACCATCCA GATCAACGCC CAGCGTTCCC GCGATGAACT ACGGTCGACC
CAGCAAAAAG TACAGGAATC AGAAGCGCGG ATTCAAGAAC TCGAACGCGA ACTCGTCGCC
AGCAGCGACC TCGTCCGCCA TGACCAGCTA ACCGGCACAC TCAACCGCCG AGGGCTGGAA
GAAATCTTCA CCAAAGAAGC TGCCCGGGCC ACCCGCCACG ACACTGCGCT CTGCGTGGCA
TTGATCGACA TAGACAACTT CAAAAAACTG AACGACTCGA TGGGTCACGA CACCGGCGAC
CAGGCCCTGA TCCATCTCGC CACCATCTGC AGGGAAACCC TCCGCCCGCA GGACACCGTT
GCCCGTTACG GTGGCGAAGA GTTCATCATC CTCCTGCCTG AAACCTCACT GGACGATGCT
GCCATCGCCC TCACCCGACT CCAGCGTGAG CTAACCAAAA AGTTCTTCCT GCATGGTAAT
GAGAAAGTAT TGATCACTTT CAGCGCCGGC GTCACACAAA TGCTCCCCAA CGACACACAA
GCAACAGTAA TCAAACGGGC GGATGAGGCG ATGTATCAGG CAAAGAAAAC AGGCAAAAAC
CGGGTTACTA CTGCGTAA
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| Protein sequence | MTTLTNPFEI ARETLRLLAT RRIPPSPDNY LTLYHEIAGT KPTENSFPES QLRSLAAALP
KASPDQLRLA RQLDEAVKAA NWEDFKKALT DFISALAESQ KLSWSELITD LLRQWDAKHP
GLTAARKRES LEHILTSSGA NPDILFNRLQ SLLRAWGHGK ETEAASLSEE AASETTPTRA
LTAATSDLLP ELRKLFAFTL ETAIATQLLE SPQLSSDAKV LANDIRTAVS PAQLQEFLTR
LKRFAFKLEL LAEDQAELRH SLLNLLRLLV GNITELVLDD HWLHGQIAVV REIIDKPLSQ
RALDDAESRL KEVLFKQAQL KASLSEARDA IKHMLAGFVD HLADFADATS DYHDKIESCA
EKISSSKDIT ELEDVLGEVM RETRTIQINA QRSRDELRST QQKVQESEAR IQELERELVA
SSDLVRHDQL TGTLNRRGLE EIFTKEAARA TRHDTALCVA LIDIDNFKKL NDSMGHDTGD
QALIHLATIC RETLRPQDTV ARYGGEEFII LLPETSLDDA AIALTRLQRE LTKKFFLHGN
EKVLITFSAG VTQMLPNDTQ ATVIKRADEA MYQAKKTGKN RVTTA
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