Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0787 |
Symbol | |
ID | 3569286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 854055 |
End bp | 855812 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637679236 |
Product | GGDEF |
Protein accession | YP_284013 |
Protein GI | 71906426 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 0.109099 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00379197 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCACAC TCACCAACCC TTTCGAAATC GCCCGGGAGA CATTGCGCCT GCTGGCAACC CGAAGAATCC CCCCCTCTCC GGACAACTAT CTCACCCTCT ACCACGAGAT TGCCGGCACA AAACCAACCG AAAATTCGTT TCCCGAATCT CAACTACGCT CGCTGGCAGC AGCCTTACCG AAAGCATCAC CAGATCAGCT TCGCCTGGCC CGGCAATTGG ACGAGGCTGT CAAGGCAGCC AACTGGGAGG ACTTTAAAAA GGCACTGACT GATTTCATCT CAGCCCTCGC TGAATCGCAA AAACTGAGTT GGTCTGAACT CATTACTGAC TTGCTGCGCC AGTGGGATGC CAAGCACCCA GGGCTGACCG CTGCCCGAAA ACGCGAATCA CTGGAACATA TACTGACCAG TAGCGGCGCC AATCCGGATA TCCTGTTCAA CCGACTGCAA AGCCTTTTGC GCGCATGGGG TCACGGCAAG GAGACAGAGG CCGCCTCCCT GTCCGAAGAA GCAGCCTCGG AGACAACCCC AACACGCGCA TTAACCGCAG CAACGAGTGA TCTGCTACCT GAATTACGCA AGCTGTTTGC CTTTACCCTC GAAACCGCCA TCGCCACCCA GTTACTCGAA AGCCCCCAAC TCTCGAGCGA TGCAAAAGTA CTGGCTAACG ACATCCGTAC TGCCGTCAGC CCGGCACAGT TGCAGGAATT CCTCACTCGC CTCAAGCGCT TTGCTTTCAA ACTTGAATTG CTCGCCGAAG ACCAGGCCGA GCTACGCCAC AGTCTCCTTA ACCTGCTCCG CCTGCTCGTT GGCAACATCA CAGAACTCGT CCTCGATGAC CACTGGCTGC ACGGACAAAT CGCCGTCGTG CGTGAAATCA TCGACAAGCC GCTCTCCCAG CGCGCCCTCG ACGATGCTGA AAGCCGCCTG AAAGAAGTAC TGTTCAAGCA GGCACAACTC AAGGCCAGCC TGTCCGAAGC CCGCGACGCC ATCAAGCACA TGCTCGCCGG CTTTGTCGAC CATCTGGCCG ACTTCGCAGA CGCCACCTCC GACTACCACG ACAAGATTGA AAGTTGCGCT GAAAAAATCA GTTCATCCAA AGACATCACC GAACTGGAAG ACGTCCTTGG CGAAGTCATG CGGGAAACAC GCACCATCCA GATCAACGCC CAGCGTTCCC GCGATGAACT ACGGTCGACC CAGCAAAAAG TACAGGAATC AGAAGCGCGG ATTCAAGAAC TCGAACGCGA ACTCGTCGCC AGCAGCGACC TCGTCCGCCA TGACCAGCTA ACCGGCACAC TCAACCGCCG AGGGCTGGAA GAAATCTTCA CCAAAGAAGC TGCCCGGGCC ACCCGCCACG ACACTGCGCT CTGCGTGGCA TTGATCGACA TAGACAACTT CAAAAAACTG AACGACTCGA TGGGTCACGA CACCGGCGAC CAGGCCCTGA TCCATCTCGC CACCATCTGC AGGGAAACCC TCCGCCCGCA GGACACCGTT GCCCGTTACG GTGGCGAAGA GTTCATCATC CTCCTGCCTG AAACCTCACT GGACGATGCT GCCATCGCCC TCACCCGACT CCAGCGTGAG CTAACCAAAA AGTTCTTCCT GCATGGTAAT GAGAAAGTAT TGATCACTTT CAGCGCCGGC GTCACACAAA TGCTCCCCAA CGACACACAA GCAACAGTAA TCAAACGGGC GGATGAGGCG ATGTATCAGG CAAAGAAAAC AGGCAAAAAC CGGGTTACTA CTGCGTAA
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Protein sequence | MTTLTNPFEI ARETLRLLAT RRIPPSPDNY LTLYHEIAGT KPTENSFPES QLRSLAAALP KASPDQLRLA RQLDEAVKAA NWEDFKKALT DFISALAESQ KLSWSELITD LLRQWDAKHP GLTAARKRES LEHILTSSGA NPDILFNRLQ SLLRAWGHGK ETEAASLSEE AASETTPTRA LTAATSDLLP ELRKLFAFTL ETAIATQLLE SPQLSSDAKV LANDIRTAVS PAQLQEFLTR LKRFAFKLEL LAEDQAELRH SLLNLLRLLV GNITELVLDD HWLHGQIAVV REIIDKPLSQ RALDDAESRL KEVLFKQAQL KASLSEARDA IKHMLAGFVD HLADFADATS DYHDKIESCA EKISSSKDIT ELEDVLGEVM RETRTIQINA QRSRDELRST QQKVQESEAR IQELERELVA SSDLVRHDQL TGTLNRRGLE EIFTKEAARA TRHDTALCVA LIDIDNFKKL NDSMGHDTGD QALIHLATIC RETLRPQDTV ARYGGEEFII LLPETSLDDA AIALTRLQRE LTKKFFLHGN EKVLITFSAG VTQMLPNDTQ ATVIKRADEA MYQAKKTGKN RVTTA
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