| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0785 |
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| Symbol | |
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| ID | 3569284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 850584 |
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| End bp | 852974 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637679234 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_284011 |
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| Protein GI | 71906424 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.225465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00421983 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGGTCTG CAGCGGGGCT TGAGGAGCGA CTTCAGGAGG GGAGGCGCCT GTTTGCCGAA
GGGCGTTATG GCGAGTCGGC GGCCGTGTTG CAGGCCTTGG TTGGGGATGC GCCCGGTAAT
GCGGCCGCGT GGCTCGAACT GGGCCGTCTG GCCTTGACGA TTCCGGATCT GCCCGCGGCC
AGAGATTTCC TCAATGAAGC GGTTGCCCAC GATCCCGGGA ATATTGGGGC GCTCTCCTTG
CTCGGCGAGG TGTTGCGCCG GGACGGTGCG TGGTTGGAGG CGCAAGCGTA TCTGCAACGA
GCCTTGGCGG TTGCCCCGGA TGATCTGCTG CTGGCCTGTC GCTTGGCCAA CTGCTATGTG
GGGTCCGGTG AGTTGTTCAA GGCCAATGAA CTGCTATCCG GATTGCTTGC CCGTTATCCT
TCGGTGGGGG AGTTGTACCT GCTGCGTGGC CTTGTGCTGT ATCAGTTGAG GCATGACGCG
CAGGCAGAGG CGGATCTGCA CCTTTGCCTG GGGCTGGCAC CAAACAGTGC GCAGGCGCTG
GCCGCCCTGG GCGATATTTA TCGCGATCGC GAATTATATG AGGAGGCCGC TGACTTCGTC
GATCGCGCTT ATCAACTGGC GCCTGATGAT ATCCACGTAG CGCGGGCACG GGCGTATCTC
AGCCTGGCTC TGCGCGACTG GGGAAAGGCA GCCGACATTT TGGCCGAGGT CTTGCAACAG
GCGCCGAGCG ACGTTGTCGC CGCAGTGAAT CGGGTTGCTG CATTGATTGA ATCCGGAAAC
GCCTTGGCCG CCATTGATGC TCTCGAAGAT GCCTTGCGCG TCGGGGCGAG TGAACCCTGG
GTTCATGAAA TGCTGGGCGC GATGTTTGCT CAGCGCGGGG ACTGGAAGAT CGCAGTAGAA
AATCTCGAAG CTTCCGTGGC GCGGGAGCCG ACCAGTACCA CTGGGTGGAA TATCCTGATC
GTTGCCTATA GCAAGCTGGG GGAAATGGAA AAGGCGGAGG CGGCGGCCAA GAAAATACTT
GAAATCGACC CTCATCATGT CAACGCGCTG ATCAATCTTG GTGGCCTGAA GATCGATCTT
GGCTTTCATG ATGAAGGGAT TCAGCTCTTC CAGCGAGCCT TGGCTCAGGC CCCAGAGTCT
CCTGCGGCAT ATTCAGGCCT GTTATTTGGC ATGCTTTTTT CGAGTGAGGT GCCGGTCAAG
GATATTCTGG AAGCTGCTGC AAACGGGGAT GAGCGAGTCT GGCATCCATT GTTGCGAAAC
TACTCTTTTG CCGATCGTAA TCAGGATGTT GAGAGAAGTT TGAAAATTGG CTGGGTGTCA
TCCGACCTAC GGGGGCATGC GGTCGGGGCT TTTGTCGGGC CTTTTGTCGG GTTCCTGAAC
AAAGAGCGGT TCCAGCATTA TGTCTATGAT AATTGGTCAA TCGAGGATTC GGTTACGGCG
ATGATCAGGC CATTCGCTAC GCACTGGCGA AAGATTCTTG GGCTCGGTGA CAACGCAGCG
GCAGAACTGA TCCGTTCAGA TGAGATCGAT ATCCTTATTG ATTTGAATGG CTATACAGCA
GGCCATCGCT TGGGAGTTTT TGCCAGAAAG CCGGCGCCGA TTCAGGTTGA GTGGCTGGGC
TATCCCGGTA CCACAGGCAT GTCGGCGATG GACTACATTC TCGTGCCCAA TGACGACTTC
CTGGCCAAGG GGGGGTGGTG CACGGAAATG CCGTGGCCGC TGAAGGACTG CTACGGGGTG
CGTAGTGGCA TTCCCGACGT GCCGGTGCGA GAAACGCTAC CCTGCGACGA GAGCAACATC
TTCACCTTTG CCTGCATGAA TCGCTTTTCG AAAGTGAGCA TGCGGGCCTT GGATTTGTGG
GGTGATTTGT TGCTGAAGGT ACCCAACTCC CGACTGTTAT TGATCGGGCG TGGCGGATCT
GATGAGCAGA CGGTGAGGGC GTTGAGGAAA CGCTTTCAGG AAAAAGGAGT GCCTGCGGAG
CGCTTGGAGA TTCTCGAATC AAAGCCGCCA CATGAGTACC TGGATACCTA CAATCAGGTT
GATCTGTGTC TCGATCCCTT CCCCTTCAAC GGTGGAACTA CGGGCTTCGA TTCAATCTGG
ATGGGCGTTC CTTATGTTAC GTTGCGAGGG GATTCGCTGC ATTCCCGGGC GGGATCGAAT
ATTCTCAAAT ATGTCGACTT GGCGGATCTG GTCGCCGATA GTGAAAGCGA ATATGTTGCC
AAGGCTGTTG CCCTGGCAGC CGACCGCGAT GCCTTGCGGC GACATCGAAA CCGGCTGCGT
GAGCGCATGA TGGCGAGCCC GTTGATGGAT ACTGCGGGTT TTGCCAAGGG CATCGAAGAT
GCGCTACGGG GAATGTGGCG AGTATGGTGT GAAGAGGGGG GCGAGAAATG A
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| Protein sequence | MGSAAGLEER LQEGRRLFAE GRYGESAAVL QALVGDAPGN AAAWLELGRL ALTIPDLPAA
RDFLNEAVAH DPGNIGALSL LGEVLRRDGA WLEAQAYLQR ALAVAPDDLL LACRLANCYV
GSGELFKANE LLSGLLARYP SVGELYLLRG LVLYQLRHDA QAEADLHLCL GLAPNSAQAL
AALGDIYRDR ELYEEAADFV DRAYQLAPDD IHVARARAYL SLALRDWGKA ADILAEVLQQ
APSDVVAAVN RVAALIESGN ALAAIDALED ALRVGASEPW VHEMLGAMFA QRGDWKIAVE
NLEASVAREP TSTTGWNILI VAYSKLGEME KAEAAAKKIL EIDPHHVNAL INLGGLKIDL
GFHDEGIQLF QRALAQAPES PAAYSGLLFG MLFSSEVPVK DILEAAANGD ERVWHPLLRN
YSFADRNQDV ERSLKIGWVS SDLRGHAVGA FVGPFVGFLN KERFQHYVYD NWSIEDSVTA
MIRPFATHWR KILGLGDNAA AELIRSDEID ILIDLNGYTA GHRLGVFARK PAPIQVEWLG
YPGTTGMSAM DYILVPNDDF LAKGGWCTEM PWPLKDCYGV RSGIPDVPVR ETLPCDESNI
FTFACMNRFS KVSMRALDLW GDLLLKVPNS RLLLIGRGGS DEQTVRALRK RFQEKGVPAE
RLEILESKPP HEYLDTYNQV DLCLDPFPFN GGTTGFDSIW MGVPYVTLRG DSLHSRAGSN
ILKYVDLADL VADSESEYVA KAVALAADRD ALRRHRNRLR ERMMASPLMD TAGFAKGIED
ALRGMWRVWC EEGGEK
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