Gene Daro_0675 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_0675 
Symbol 
ID3568948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp743831 
End bp746608 
Gene Length2778 bp 
Protein Length925 aa 
Translation table11 
GC content61% 
IMG OID637679123 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_283901 
Protein GI71906314 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones52 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGGAGA CAAGCAAGAG GTCTGCGCCG CCTGTCGAAT CTCCCATTGT ATCGCCATCG 
CCATTGGACG GGCCGGCCAA ACAGTCGGCG CCCCATCGCG GTGCGTATCG ACACAAAGCG
CACCAGCCGG GCGCTCCCGG TGTCATAAAC GCCCACTTTG GGGCGGGTAC GATATTTGCT
GAACTCAGCA TAATTTACAT ATCCAACCCC ATAACTGTGC ACTTTCGACC AATCCGCCAA
AATCATTCTG GCGCTACGCC ATCTCCGCTC AATCATTCCA GAGTGCTCGA CACCCTGGTC
AAGAACCTCG AAGGCATGGC CTACCGCTGC CTTCACGACG CCGACTGGAC GATGGTTTTC
GTCAGCGATG GTTGCCAGGA GCTCAGTGGC TATGCCTCTT CGGAGATTCT CGGCAAGACC
GGCGTTTCAT GGGAAGAGAT TACCCACCCG CAAGACCGCG GGCGCGTCCG TGCATGCATC
GAAGACGCGA TCGGCAGCGG CCAGCGTTTT GCGGTCCAGT ACCGGATCGT TTGCAAGTCG
GGACAAGTCA AATGGGTCAT CGAGCGCGGC GTGGCGATTC GGGACGAGCT GGACGAGAGC
GTGATCGAAG GTTTCATCGA GGATATTTCG GTACGCCGCA CGACACTCGA AGCGCTCGAG
GCTGCCGAGC AGCGCTATCG CAACATCTTC GAACATGCCT CCGAGGGTAT TTTCCAGTCC
ACCCGCGACG GCCATTACCT GGCCGCCAAC CCGGCGCTGG CTAAATTGTA TGGCTATGAC
AATGCCCAGG CGTTGATGAC CGATCTGGCC GACATCGAAC GCCGGCTCTA TGTCCAGCCC
AATCGTCGGG AAGAATTTCT CACGCTGATC GAAAAAAATG GCGCGATCCT CAACTTCGAG
TCGGAGGTCT ATCGCCGCGA CGGTTCGCGC ATCTGGATTT CCGAGAATGC CCACGTCGTC
TTCGGCCCCC AGGGTGAGTT CATCTGCTAT GAAGGCACGG TGCAGGACAT TTCGGAACGC
AAGCGGACCG AGGCTCATCT CCAGCTCATG GCCATGGTCT TCTCGAACAG CAATGAAGCC
ATCATCGTGA CCGATGCCAG CAACCGGATC ATCGCCACCA ATCCGGCTTT CACCTGCCTG
ACCGGCTACC AGCCGGACGA CGTGATCGGC AAGAATCCGC GCATACTCTC GGCCGGTACG
ACGCCGACCG AGGTTTTCTC CGACATGTGG ACATGTCTGC ATCGGGAAGG CGCCTGGCAA
GGCGAGCTGT GGGACCGGAA AAAAAATGGC GAGGCCTACC CCAAATGGCT GTCAATCTCG
CTGGTCCGCG ACGAGGATGG GCAGATTCGC AACCACATCG GCAGCTTCAT CGACATTTCC
GAGCTCAAGG CGACACAGGA GCGCATCCGC CACCTCGCCC ACCACGATAC GCTGACCAAT
CTGGCCAACC GCTTCAGCCT GCACGAAAAA CTCGCCCAGG CCCTCGCCTT CTGCAAACGT
AACCGCATGC AGCTGGCCCT GATGCTGATC GATCTCGATC GCTTCAAGAC CATCAACGAT
ACCCTCGGCC ACCAGGCCGG CGACGAACTG CTGGTCCAGG TGGCGAAACG CCTCTCGCAC
GCCGTCCGCG AGAGCGACAT CGTGGCCCGG CTCGGCGGTG ACGAATTCGT GATCGCCCTG
CCCGGCATCG GCTCGCCGGC CGACGCCGCC CACCTGGCCG ACGATATCAC TCGCGAGATT
TCCGCCCCTT ACCTGATCAA AGGCCAGGAG CTGAGAACCT CGCCGAGCAT CGGCATCTGC
GTGTACCCGG GAGACGGCTC GGAAATCGGC GATCTGCTGA AAAACGCCGA TGTCGCGATG
TACCACGCCA AGGCCAATGG GCGGGGCAAT TACCAGTTTT TCACCGAAGA CATGAATATC
GCGACCACCG AGCGCATGTG CCTCGAGTCG GACCTGCGTC TGGCCATCAC CCGCCGCGAG
TTCCTGCTGC ACTACCAGCC GCAACTCGAC CTGCGCAGCG GCACCATCGT CGGCGTCGAG
GCCCTGATCC GCTGGCAGCA TCCGACCCGC GGCCTGGTTT CCCCGGCCGA CTTCATCCCG
ATTGCCGAGG AGAGCGGCAT GATCGCGGCC ATCGGCGACT GGGTGCTCGA GGAAGCCTGC
CGCCAGCTCA AGGTCTGGCA GAACCGGGGC ATCACCCATC TGCGCATGTC GATCAACCTG
AGTGCCGGAC AGTTTCTCGA CAAGACGCTG CCGGCCCGCA TCCATGAACT GCTGGCCGCT
AACGACCTGA GTGCGGACCG GCTCGACCTG GAAGTCACCG AATCGATGTC GATGGCGTCG
CCGGACGAAT CGATCAGCGT GATGAAAACC CTGAGCAGCA GCGGGCTGAC CCTGTCCATC
GACGATTTCG GCACCGGCTA CTCGTCACTG GCCTATCTCA AGCTGCTGCC GATCCACACG
CTGAAAATCG ACCGCTCCTT CGTCAAGGAC ATCGAATCCG ATCCCAACGA CGCCGACATC
TGCGACGTCA CCGTGCTGCT TGCCCACAAG CTTGGGCTGG AAGTCGTCGC CGAAGGCGTC
GAGACCGAGG CGCAACTGAA ATTCCTGCTC AGCATCGGCT GCGAAAAGGT CCAGGGCTAC
CTGATCAGCA AGCCGCTGCC GGCCGACCAG GCGGAAAGGT TCATCCGCAA CAATCCGCCG
ATGAAGGGCC TCGGGACCAT TGACCTGTGG CCAGCCCAGG AACAACTCAC CCCAATCGAA
GAGCACTGCC ATGCGTAA
 
Protein sequence
MTETSKRSAP PVESPIVSPS PLDGPAKQSA PHRGAYRHKA HQPGAPGVIN AHFGAGTIFA 
ELSIIYISNP ITVHFRPIRQ NHSGATPSPL NHSRVLDTLV KNLEGMAYRC LHDADWTMVF
VSDGCQELSG YASSEILGKT GVSWEEITHP QDRGRVRACI EDAIGSGQRF AVQYRIVCKS
GQVKWVIERG VAIRDELDES VIEGFIEDIS VRRTTLEALE AAEQRYRNIF EHASEGIFQS
TRDGHYLAAN PALAKLYGYD NAQALMTDLA DIERRLYVQP NRREEFLTLI EKNGAILNFE
SEVYRRDGSR IWISENAHVV FGPQGEFICY EGTVQDISER KRTEAHLQLM AMVFSNSNEA
IIVTDASNRI IATNPAFTCL TGYQPDDVIG KNPRILSAGT TPTEVFSDMW TCLHREGAWQ
GELWDRKKNG EAYPKWLSIS LVRDEDGQIR NHIGSFIDIS ELKATQERIR HLAHHDTLTN
LANRFSLHEK LAQALAFCKR NRMQLALMLI DLDRFKTIND TLGHQAGDEL LVQVAKRLSH
AVRESDIVAR LGGDEFVIAL PGIGSPADAA HLADDITREI SAPYLIKGQE LRTSPSIGIC
VYPGDGSEIG DLLKNADVAM YHAKANGRGN YQFFTEDMNI ATTERMCLES DLRLAITRRE
FLLHYQPQLD LRSGTIVGVE ALIRWQHPTR GLVSPADFIP IAEESGMIAA IGDWVLEEAC
RQLKVWQNRG ITHLRMSINL SAGQFLDKTL PARIHELLAA NDLSADRLDL EVTESMSMAS
PDESISVMKT LSSSGLTLSI DDFGTGYSSL AYLKLLPIHT LKIDRSFVKD IESDPNDADI
CDVTVLLAHK LGLEVVAEGV ETEAQLKFLL SIGCEKVQGY LISKPLPADQ AERFIRNNPP
MKGLGTIDLW PAQEQLTPIE EHCHA