| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0470 |
|---|
| Symbol | |
|---|
| ID | 3569135 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 527827 |
|---|
| End bp | 529065 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637678912 |
|---|
| Product | GGDEF |
|---|
| Protein accession | YP_283697 |
|---|
| Protein GI | 71906110 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 57 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.606028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCCG GGCGCGCCTT CGGTTTTCTG GCTGCCCTGT TCGTGCTGGC TTTCGGCTTG
GCGGTGGTTC TGCTGGCCAT GGACCAGCAG CGGGTGATCG ATGCGAACGC GCATCTTGAA
GAACAAACCG TGCCGGAAAT CATTCGCTAT CAGCGGCTGG CCAGAAACCT TGAACAGCTA
CGCCAGGAAG GCGAGCGTAT TTTTGCAGTC AGTTCGCATG CCTCGCGCCA GCAGTCGATG
TTTGTCGTGA CCCTGATCGC CAGCCACCCC AGCGTTCTGG AGCACCCCGG GGCGGCCAAG
CTGGCACGCG AAACGGAACA GTTTCTTGGC GAGGTGGTGC GTCAATCGGT ACGCGACGAA
CAGCGGCCGG CGATCCATTA TCAAGAGTGG CAGCGCCTGG CGTCACGTCT TGGCATACAG
GTCGACGATG TGTCGATCGA GGGAATCAAT CTTGCCACCA GTGACCTGAA CGTGGCGGCA
GACGCCATGC GGCTGGCACG TTACAAGTTG ATCATTGCCC TGCTACTGGT TGGGCTGTTC
CTGCTGGCTT TCATCGTCCT CGTCCGTCGC CACCTGATCC AGCCCCTGCA GCGGATCGAT
CATGCCCTGT CCAATCTGAG TGCGGCCAGT CCCTTGCCGG ATTTCGACAC GTCGAGAATG
CTCGAGATAC AGGCCGTCGA AGAGGCGATT CGCGAGCACC ATGATTTGCT GATCCAGAAC
GAACAGGCAC GACAGGTCCT GGAAAAACTG GCCAACAAGG ATGGCCTGAC CGGCCTGATG
AACCGCCGCT TCTTCATGCA GTCGGCCGAG GCTGAACTGC AGCGGGCGCA GCGCTATCGG
CGGCCGGTCA CGGTTGCCAT GGCCGACCTC GATTTTTTCA AGAAACTGAA CGACACCTAT
GGTCATGCCG CCGGCGATGC GGTGTTGTGT GCCTTCGCCG ATCTGGTTCG GGACTCCTCG
CGGCAGTCCG ATCTGGTTTG TCGTTACGGT GGTGAAGAGT TCGCTTTCCT GTTCCCGGAA
ATTTCGCCGA CCGAGGCAGA GGCGCTGGCC GAGCGCTTGC GCGCCAGTTG CGCCAACGCC
GAAATCGGCC TGCCCGATGG CCGGACGGTC AAGGTGACGG TCAGCATGGG GCTGGCCGAT
GCCAGTGAAT GCCCGATCGA AATCGCCCTC AAGCATGCCG ACGACGCCCT GTACGAGGCC
AAGCGCCTCG GGCGGAACCG GGTGGTGCTC GGCGCCTGA
|
|---|
| Protein sequence | MHAGRAFGFL AALFVLAFGL AVVLLAMDQQ RVIDANAHLE EQTVPEIIRY QRLARNLEQL
RQEGERIFAV SSHASRQQSM FVVTLIASHP SVLEHPGAAK LARETEQFLG EVVRQSVRDE
QRPAIHYQEW QRLASRLGIQ VDDVSIEGIN LATSDLNVAA DAMRLARYKL IIALLLVGLF
LLAFIVLVRR HLIQPLQRID HALSNLSAAS PLPDFDTSRM LEIQAVEEAI REHHDLLIQN
EQARQVLEKL ANKDGLTGLM NRRFFMQSAE AELQRAQRYR RPVTVAMADL DFFKKLNDTY
GHAAGDAVLC AFADLVRDSS RQSDLVCRYG GEEFAFLFPE ISPTEAEALA ERLRASCANA
EIGLPDGRTV KVTVSMGLAD ASECPIEIAL KHADDALYEA KRLGRNRVVL GA
|
|---|
| |