| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0458 |
|---|
| Symbol | |
|---|
| ID | 3569123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 502636 |
|---|
| End bp | 503772 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637678900 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_283685 |
|---|
| Protein GI | 71906098 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 0.217472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA CTTCTTCGGG TCGGCTTGCC GGGCGTAAGA CCCGTATTGC GCTGGGGCTC
GCCATGCTGG CGGCCGCCGG CGCTTTCTTT TGGTCGCGCT CCGGGACGCC GACCCCCGTC
GAGGCGCCAA AATCTGCCGC TGCGGTGCGG CCGGCCCTGA CCGTCCGCCT GACTTCGCCG
CAAACGCTGG ACTGGCCGCT GGTCCTGCCG GCCACCGGCA ATGTCGTGGC CTGGCAGGAG
GCGGTGATCG GCGCCGAAAT CGCCAATTAC CGGATCACCG AGGTCCGTGT CCAGGTCGGC
GATAGCGTCA GAAAAGGCCA GGTCATGGCC CGCATTGCCA GCGATACCGT GGCCAGCGAA
CTGGCCGAGG CGAAAGCTTC GGTGGCTGAG CTCGAAGCCA GCGCCGCCGA AGCGAAGGGC
AATGCCGAGC GGGCCACGGA ATTGAGAGAG AAAGGCTTCT ACAGCTCACA ACTGAATACC
CAGTACCAGA CGGCCCTGCA CACCGCGCAG GCTCGTCTTG CTGCGGCTCG GGCTCGTTTG
CAGGCGGCTG GCTTGCGGAT GGACAAGACC GATGTGCTGG CCCCTGACGA TGGCGTCATT
TCGGCACGCA GCGCGACAGT GGGTTCGCTG ACCCAGCCTG GGCAGGAGTT GTTCCGCTTG
ATTCGCGGCG GGCGCCTGGA ATGGCGGGCC GAAGTGCCGT CGTCCGATCT CGGCCGGGTC
AAGTCCGGCG TGGTGGCGAC ATTGACCGCG CCGAGTGGTG AAAGCGTCAA GGGAGCGGTG
CGGGCGGTGG CGCCCAGCGT CGATCCGCAA ACCCGTAACG GGCTGGTTTA TGTCGATCTG
CCGGTCTCGG GCGCCATCCG GGCCGGCATG TTCGCGCGCG GCGAATTCGA GCTGGCGCAG
AGTCCGGCGC TGACCCTGCC GCAATCGGCG GTTGTGCTGC GCGAAGGCTT TGCCTATGTT
TTCCGGCTGG AGGGCGTGGA TAGGGTGGCG CAGACCAAGG TGCTGCTCGG CCGGCGGGTT
GGCGAGCGGA TCGAGGTGGT TTCCGGGCTG GCGGCCGAGG CGCGGGTCGT CGAATCCGGT
GTCGGCTTCC TGGCCGATGG CGATGCCGTC AAGATCGTGA CGGGCGCCGC GCAATGA
|
|---|
| Protein sequence | MEKTSSGRLA GRKTRIALGL AMLAAAGAFF WSRSGTPTPV EAPKSAAAVR PALTVRLTSP
QTLDWPLVLP ATGNVVAWQE AVIGAEIANY RITEVRVQVG DSVRKGQVMA RIASDTVASE
LAEAKASVAE LEASAAEAKG NAERATELRE KGFYSSQLNT QYQTALHTAQ ARLAAARARL
QAAGLRMDKT DVLAPDDGVI SARSATVGSL TQPGQELFRL IRGGRLEWRA EVPSSDLGRV
KSGVVATLTA PSGESVKGAV RAVAPSVDPQ TRNGLVYVDL PVSGAIRAGM FARGEFELAQ
SPALTLPQSA VVLREGFAYV FRLEGVDRVA QTKVLLGRRV GERIEVVSGL AAEARVVESG
VGFLADGDAV KIVTGAAQ
|
|---|
| |