| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0424 |
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| Symbol | |
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| ID | 3567670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 466019 |
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| End bp | 468166 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637678864 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_283651 |
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| Protein GI | 71906064 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000000207007 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00445241 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGATG TCGTCAACCA GCCTTCCAAA ACCGGGAGCG ATTCGCTTCT AGTCCTGGGC
TACCAGGTCT GGCTGGCCGT GGCCTATCTT CTGGTAGCCC TGCTGTGCTG GCTTGGCGTG
TCAATGGAAT TCAGCCAGAT CGATGAGAAC ATCGAAACCC TCGCCCGTGA GCGGGGAGCC
GCGCTTTTTC GGTTGGTTGA GCTGACCCGT GACTGGAATG CCAAGCATGG CGGCGTCTAT
GTTCGGGTGA CCGAGGCGAC ACAACCGAAT CCCTATCTGA AGCATCCGAA GCGCGATCTT
CAGACAACGG ATGGCTTGCA ATTGACCATG GTCAATCCGG CCTTCATGAC TCGCCAGATT
GCCGAGATTG CGGAGCAGGC CGATGGCGTT CAATTCCACA TCACCAGCCT GAAACCGATT
CGTCCGGCCA ATACGCCGGA CGCCTGGGAG GTCGATGCCC TGGAGACCTT TGAGGGCGGC
AAGCGTGAAG TTCTATCGCT GGTGCAGAGT GAAAAAGGGG CTATGCATCG CTATATGGCC
CCCTTGTTCG TCAAGCAGCC CTGTTTGAAT TGCCATTCTG AACAGGGCTA TCGGCTTGGT
GAGATCCGGG GCGGCATCAG CGTGTCGATG CCAGCTGAAA AAATCCTCTC GGTTCGTCGC
GATCAGCGGC GCCGAATAAT GCTGGTCTTC GGTGCCGGGG CATTGATGTT TGCGCTACTG
ATGCATTTCG TGATCAGGCG CTCACGCCAG CATTTTCTGC ACCTGAAAGC GGTCACGGCC
GGGCAGGAAA AGTTGATTGC CGAGCGGACC CAGGCGCTTT CCTCTGCCAA CGAGCAATTG
ATTGGGGAGG TGGCTGAGCG CAAGCGGAAG GAAATCCAGA TTTCAGAAAG CGAAGCACGC
TATCGCTCGG TCATCGAAAC CAGTCAAAAC GCCATTCTGA TCATGCAGGC GCCGAATTTT
GTCATTGTGT TTGCCAATGA GCAGGGGGCT GCTCTGGTGG GGCTTGCACC CAGTCAAATG
ATTGATCGGC CGATCCTTGA TTTTGTTTGC CAGCAGGATC GCAGCATGGT GGCCGAGCGG
CTGGCCCGTC GCGCACGCGG CGAACCTGTT TCGCCCACGG TACGTGCCCA TTTTTGCCGT
TTGGACGGTT CCCAGGTCCG GGTCGGCGAT GTCCACGTGG CGCGCATCGA GAGTGCTTCG
GAGTATCCAC AATGGGTGCT CAGTGTGCAT GATGTGACCA ACCGCCTGGC AAACGAACGG
GCGCTGCAGA TTTCGGCGGC CGTTATGGAG AATGCCGCCG AAGGCATTGT GGTGACCGAT
GCCCAGAATC GGATCATTCA GGTCAATCCT GCTTTTTCGG CCATTACGGG CTACCGGCCA
CAGGAAGTAT TGGGCAAGGA TCCCAGTCTC CTTGGTTCGG GTCGGCATGA GAGCGGCTTT
TTCCGCGAAA TGTGGGAAAC CCTGGAAAAA GAGGGGCACT GGGCCGGGGA GATCTGGAAT
CGTCGTCCGG ACGGGACAGT CTACGTCGTC TGGCTGGCAA TTTCGGCGAT TCGTGGCGAG
GGTGTAGAGA GTGGTGGCCG CCATGTGGCG ACCTTCATCG ATATCACCCA GCGCAAGGAG
GTCGAGGAAC TGCTCCGCCA TCGGGCGCAA AGCGATCCCC TGACCGATTT GCCGAACCGC
ACCCTGTTCT ATGACCGCTT GCAGGTGGCG CTGACCCACG CCCGACGCTA TAGCGAGGAA
TTTGCCTTGC TTTACATCGA CCTCGATCAT TTCAAGATCG TGAACGACAC GCTTGGCCAT
GCCGCTGGTG ACGAGTTACT GATTGAGGCC AGCCATCGGC TGACGCAGGC CGTACGCCAG
TCGGATACGG TGGCCCGCCT GGGGGGGGAC GAGTTCGCCG TCATTCTGCC CAAGACTGGC
AGTCAGTCCG AGATTGAAGA AGTGGCGCAG CGCGTCGTCG AGACGATGGT TCGACCGTTT
CTCCTGTCGG CCGGCACGAT CAATATTTCG ACCAGCGTCG GGGTGGCCAT TTATCCGCGC
CACGGCGAAG ATCTGGAAGC GATCCGGGCC AGCGCCGATG CGGCTCTCTA TTCAGTCAAG
CAATCCGGAC GTAACGGCTA TCGCTTGTAC GTGCCGCCTG GCCACTAA
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| Protein sequence | MNDVVNQPSK TGSDSLLVLG YQVWLAVAYL LVALLCWLGV SMEFSQIDEN IETLARERGA
ALFRLVELTR DWNAKHGGVY VRVTEATQPN PYLKHPKRDL QTTDGLQLTM VNPAFMTRQI
AEIAEQADGV QFHITSLKPI RPANTPDAWE VDALETFEGG KREVLSLVQS EKGAMHRYMA
PLFVKQPCLN CHSEQGYRLG EIRGGISVSM PAEKILSVRR DQRRRIMLVF GAGALMFALL
MHFVIRRSRQ HFLHLKAVTA GQEKLIAERT QALSSANEQL IGEVAERKRK EIQISESEAR
YRSVIETSQN AILIMQAPNF VIVFANEQGA ALVGLAPSQM IDRPILDFVC QQDRSMVAER
LARRARGEPV SPTVRAHFCR LDGSQVRVGD VHVARIESAS EYPQWVLSVH DVTNRLANER
ALQISAAVME NAAEGIVVTD AQNRIIQVNP AFSAITGYRP QEVLGKDPSL LGSGRHESGF
FREMWETLEK EGHWAGEIWN RRPDGTVYVV WLAISAIRGE GVESGGRHVA TFIDITQRKE
VEELLRHRAQ SDPLTDLPNR TLFYDRLQVA LTHARRYSEE FALLYIDLDH FKIVNDTLGH
AAGDELLIEA SHRLTQAVRQ SDTVARLGGD EFAVILPKTG SQSEIEEVAQ RVVETMVRPF
LLSAGTINIS TSVGVAIYPR HGEDLEAIRA SADAALYSVK QSGRNGYRLY VPPGH
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