| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0411 |
|---|
| Symbol | |
|---|
| ID | 3568864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 453227 |
|---|
| End bp | 454180 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637678851 |
|---|
| Product | PAS:GGDEF |
|---|
| Protein accession | YP_283638 |
|---|
| Protein GI | 71906051 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 73 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.320308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATAG CGCAGGCCTT CAATGGCATT GATCGGCTCG AACGCAGCGA CGACTGGGGT
GTGTACAAGA CCCTGCTCGA ATCGACCAAG GCGATTCCGT GGAAGATCAA CTGGCAGACC
AAGCAGTTTG ACTATATTGG CCCGCAGATC GAGACGCTGC TCGGCTGGCC GCGTGACAGT
TGGCTCGGCG CGATGGACTG GATTGAGCGC ATCCATCTGG AGGATAGGGA AAAGACGGCC
AATTTCTGCA TCAGCCAGTC CGAGCAGGGC GTCGATCACG AGGCCGATTA CCGGGCCTTG
AAGGCCGATG GCAGCTATGT GTGGATTCGC GATGTGGTGC ATGTTATCCG CGACACCAAC
GGCGTGACGA CCGACCTGGT CGGCTTCATG TTCGACATAT CGGCGCGCAA GCAGATGGAG
GAGGATGTTT TCGAACTCAA TCGCAAGCTG GAGGCCTGGT CAAATCAGGA TGGCTTGACC
GGCATCGCCA ACCGTCGCCT GTTCGATCAT ACGATGGCCG CCGAGTGGGC GCGTGGCAAG
CGTAGCCGGG AACCGCTGTC GCTGCTGATG TTCGATGTCG ATCATTTCAA GGGTTACAAC
GACCATTACG GCCATGTGAA GGGGGATGAG TGCCTGATCC GTCTGGCCCG CGAAGTCAGC
CAGATGCCCT TGCGTTCGAC GGATCTGTTT GCCCGCTACG GCGGCGAGGA ATTCGCCTTT
GTCCTGCCGC AGACCCCATC TGACGCGGCC CAGCAGATTG CCGAGAAGTG CCGTGAAGTG
GTGGCTGCCC TGAAAATTCC GCACGCCCTC TCGCCGGCGG GCACGATCAC GATCAGCGTT
GGTGTGTGCA CCATGCTTCC CGGCGAGGAA AGTTCGTACA TGACCTTGAT CGAGCGGGCT
GACGACAAGC TTTATCGGGC CAAGCGGAAC GGACGAAATC GCGTTTGCTG CTGA
|
|---|
| Protein sequence | MEIAQAFNGI DRLERSDDWG VYKTLLESTK AIPWKINWQT KQFDYIGPQI ETLLGWPRDS
WLGAMDWIER IHLEDREKTA NFCISQSEQG VDHEADYRAL KADGSYVWIR DVVHVIRDTN
GVTTDLVGFM FDISARKQME EDVFELNRKL EAWSNQDGLT GIANRRLFDH TMAAEWARGK
RSREPLSLLM FDVDHFKGYN DHYGHVKGDE CLIRLAREVS QMPLRSTDLF ARYGGEEFAF
VLPQTPSDAA QQIAEKCREV VAALKIPHAL SPAGTITISV GVCTMLPGEE SSYMTLIERA
DDKLYRAKRN GRNRVCC
|
|---|
| |