| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0389 |
|---|
| Symbol | |
|---|
| ID | 3569860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 420106 |
|---|
| End bp | 425289 |
|---|
| Gene Length | 5184 bp |
|---|
| Protein Length | 1727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637678831 |
|---|
| Product | Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2 |
|---|
| Protein accession | YP_283618 |
|---|
| Protein GI | 71906031 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2373] Large extracellular alpha-helical protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.188526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0474076 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGTT TGTCGAAGAG TCGGGGTTTC GGGGCTGTTG CCTGGTTGGT GGCGCTGGCG
GTTGCGATCG CTGCTGTCCT GATCTACGCC AAGCCATGGC AATCGGAAAC GGCGAGCGCC
GGAGACGGGC CGTTCGAGAT TGCCGATTTC TCGAATCGCG ATTTCGAAGG ATCGCCATCG
CTCGCGTTGA GTTTTACCCT GCCGATGGAT GCCAAGAAGG GCTACGATGA GCAGATTCAG
GTCTTCGAGA TGCCGCCGCG CCCGGGCGAT GCCAAGGCGC AGGTGAATGA ATCCGAGGAT
GAAGGCGAGG AGGGCGCGCC GGGCAGCGCC AATCCGCAAG TCAGCACCGA GCCGGCCGAT
GTCGCGACCG ACGGTGGCAA GCTGATCAAG GGCGCCTGGG TGGTCGGCGA CAATCCGCGC
ATCCTGTATT TTCCGCACAT CAAGCCGCAG ACGCGCTATG TCGTTCGCGT CGCTGCCGGC
CTGAGTTCGC TGTCCGGTCA GAAGCTGAAT GAGGAGGGGC GTTACTCGGT GGTTACGGCC
ACTGTGGCGC CCGCCTATTA CTTCGCCAGT CGCGGCACGG TCCTGCCGGC CAAACAGAAT
GGCGGTTTGC CGGTAGTCAC CGTCAACGTG CCTGAGGTCG ATGTCCAGTT CCTGCGCGTC
AAGCCGGACC AGCTGCCGCG CTTCCTCGAC AAGGTGATCA GCGGGCCGCG GCCGCAGGCG
CGCGCCAAGC GCCAGAACAA CGACGACTAC GACTATGACG TGGAGTACGA CGGCGACTAT
GACTGGCGCG CCACCAGCCT GAAGGGGGCG GTCAACAACT GGTCGCTGGA CAGCTTGCAC
AACCTGACCG AAAGCGTCTT TGTCGGTCGT TTCCTGACCG AGCAGAAGCC CAACAAGCGC
AACGTCACTT TCCTGCCGGT CGAGGACATC AAGGAACTCC GCGAACCGGG GATCTATATC
GCGGTGATGA GCCAGCCCAA CCGCTTCCGC TACGACTATC AGGTGACCTA TTTCTACGTC
AGCGATCTCG GCCTGAGCAC CCGCCTGTTT GCCAAGGGGG CTGATGCCTA TGTCAGTTCG
CTGACCACAG GCAAGGCTGT TTCCGGTGTT GAAGTAGCGT GGATGGACGA AAACGCCAAG
GTGGTGGGTC GCGCCGAAAC CGACAGCAGC GGCCGCGCCA ACTTTGCCGA GCGGCCCGCT
GCAGCGAAGG TCATCATTGC TCGTCACGGC CAGCAGATCT CGATGGTCAC GCTCAAGGAA
CCGGCGCTCG ACCTGTCCGA ATACGATGTG GCCGGCCTGC CCGGTCGGCC GGTGCGCCTG
TTCGCCTACT CCGGGCGCAA CCTGTATCGC CCCGGCGAGA AATTCGACAT TTCCGTGCTC
GCGCGTGATG CCGATGGGCG ACCGGTGCCG GCCCAGCCGA TTCAGGCCAT CCTCCGGCGT
CCGGACGGCA AGAGCCAGTT CACCGCGACC TGGCAGCCGG ATGCCAAGCT CGGTGGCTAC
TACCAGAGTC GCATCGAGCT GCCGGTCGAC GCCGCAACCG GTGCGTGGAC CCTCGAGCTG
CGCGCCGACC CAGCCGACAA GCTGGCGACC ACCAGCTTCC GTTTCGGGGT CGAGGAATTC
CTGCCCGAAC GCATGAAGCT CGACCTGAAC AGCAAGCAGG CGACGGTCTC GCCCGACGAA
TCCCTGAAAA TCGACATCAA GGGCGCCTAT CTCTACGGAG CCCCGGCGGC TGGCAACCAG
CTGCTCGGCG TGGCCGTTTT CGAGCGCCAG AAGAATCCGC TGGCGCAAAA GCTGCCCGGC
TTCGAGTTCG GCGATACCAA TGAGGACAGC CAGCGTCAGC GCGTTGAACT CGAGCAGAAC
CAGCTCGACG AGAACGGCGA CCTCGCGCTG GAGGTCGATC TCGCCCCGGC CAAGGGCAAG
CGTTCGCCCT ACACGGTACG GACAACGCTC AGCCTGCTCG AAAGCGGCGG CCGGCCGGTG
GTGCGCAATT TTGAACGGGT GATCTGGCCA GCCCCGGTGC TGGTCGGTGT CCGTCCTCTG
TTCACCGGCG ATTACGCCCG CGAAGGCAGC GTCGCCCAGT TCGAGGTGAT CCGCGCCAAC
GCCGAAGCCA AGCTGCATGG CGGCAAGGCA CTGCCTGTCC GCCTGTTCCG CGAAAACCGC
GACTACTACT GGCGCTTCGA TGACCAGCGC GGCTGGCATT CGGGCTTCAC CGAAACCGAC
GAGCTGGTCG ACACGACGGT GGTCAGCATT CCCGATGGCA GCCGCGGCAA GCTCGGCCTG
CCGGTCAAAT ACGGCCGTTA TCGCGTCGAG ATCACCGATT CGGAAACCGG CCAGATCACC
AAATACCGCT TCTACGCCGG CTGGAGTGCA CGCGGCGACG AAACGCAAGG CGTCCGTCCC
GACCGGGTGG CGCTGAAGTT CGACAAGCCG GCCTACAAGG ATGGCGAGAC TGCCAAGCTG
ACCATCACCC CGCCGCATGC CGGCGAAGCG CTGGTCACCG TTGAGGCCGA CAAGACCCTT
TGGTTGAAGC GCGTTTCGGT GCCGCTCGAA GGCACGACCA TTGATATCCC GGTCGACAAG
GACTGGAAGC GTCACGACCT CTACGTCTCG GCCGTGGTGC TGCGCCCGGG CAGTGCCGGT
GAAAAGGTCA CTCCGGCGCG GGCGCTCGGC CTGACCCATC TGCCGCTCGA ACGTGGCGAC
CGCAAGCTGG CAGTCAGCCT CGATGCACCG AAGAAGATGT TGCCGGACAC CCGCCTCAAG
GTGAAGGTGA AAGTTCCCGG CCTGACCGGG CAGCAGGCAG TTGTTACGCT CTCGGCAGTC
GATGTCGGCA TCCTCAACAT CACCCGTTAC GCCACGCCTG ATCCGCATGG CCATTTCTTT
GGGAAGCTGC GCTATGGCGC CGACCAGTAC GACGTCTATG GTCGCCTGAT CGAGAAGATG
GGCGGCCAGA AGGGTAAGCT GAAGTTCGGT GGCGATGCGG CGCCGAAGGC GACCAAGAGC
CTGCCCAAGA AGGTGCGTCT GGTCGATCTG TTCTCCGGGC CGGTGCAGCT GAACGAGCAG
GGCGAAGCCG AAATCGGCCT CGACGTGCCA GACTTCAACG GCACCCTGCG CCTGATGGCG
GTGGTTGCCG CACCGGACAA GTTCGGTAGC GCCGAGGCGG AAACCATCGT CGCCGCACCG
CTGGTCGCCG AACTGATGAC GCCGCGCTTC CTGACCGTGG GCGACAACGC GACCATCGCG
CTCGACCTGC ACAACCTATC CGGTGTCGCA CAAAAGTTGA AGGTCCGGAT CGAGAACGCC
GATGGCCTGA AGATCCAGAA CGCCGAACGC GAACTGGAGC TCAAGGATCA GCAGAAACAG
ACCCTGCGCT TCCCGCTCGA AGCCGGCAAT GCCTTCGGCC TGGCCGATGT CCGGGTGGTG
GTCAGCAGTG CGGCCGGCCT CAAGCTGGAG CGCAGCTTTG GCCTGCAGGT TCAGGCCGCG
ACACCACAGC AGCAGGTGCT GAAAATGCTG GCTGTCGGGC CGGGTGAAAC GGTCGAGGTC
AAGGAGGCTG AACTCGGCGG TTTCCTGAAG AGCACCGTCC AGTCGCACCT GATCCTCTCC
GACAAGGCGC CGATCGACGT GCGCAGTGCC ATCCAGGGCT TGCTGACCTA TCCGTACGGC
TGCGCCGAGC AGACCACCAG CACCGCCTAC CCGCATGTGC TGGTCGATGA GGAAGGCGCC
AAGCTGTTCG GCCTGAAGCC TTACAGCCGC GACCAGCGGG CCGACATGCT GGAGAAGGCG
ATCGCCAAGC TGGGCGCCAT GCAGGCGCCG AATGGCGGCT TCAGCCTGTG GGGCAACATG
TCAGAGTACC AGTACTGGCT CTCGGCCTAC ATCAGCAACT TCCTGCTTGA TGCCCGCGAA
CAGGGCTTCA AGGTGCCGGA AGCGATGCAG AAGAACGCCA TGGAATTCCT GCTCAAGAAT
CTGCAGGAAG GGGCGGCCGG CTTGCCGAGT GGCAAGGTGA CCTACAACCA GAACGGCTGG
CAGGATTACC GCTACGGCGG CTCCGGTCGC TTCGGCGTGC TGGCCTATGG CGCCTACGTG
CTGTCCCGTG AAGCCAAGGC GCCATTGTCG ACGCTGCGCC AGATGTTCGA CCTGCGCGAG
CAGGCACATT CCGGCCTGGC GCTGGTCCAT CTCGGTCTGG CGTTGAAGCT GATGGGCGAC
GAAACGCGTG CCCAGACGGC GCTGGCCGAA GGCGTCAAGA AGAGCCGCGA TACCGGCTAC
TGGTGGGGCG ACTACGGCAG TCCGCTGCGC GATGCGGCGC TGTCCTACGC CTTGCTCGAC
CGTCACAAGC TGAAGGTTGA AGGCCAGGAC AATCTGGTCG CCGTTGCAGC CGCCGAACTG
GGCAAGAACC GCTACACCAG CACCCAGGAA AAACTGGCGC TCTTCCTGCT CGGCCGCAAT
TTCGCCAAAG CCGGCGAGGG CGAGGCCGGC TGGACGGCGG AAGTGCTCGG CAAGGAAAAG
CCGGAAACCA TCAATGGCTC CGGTACCCTG ATCCGGCCTC TGTCCGCTGC TGCCTTGCAG
GGCGGCGTTC GGATCAAGAA TACTCACAAG GAAAGGCTCT ACCTGCAACT CGCCTACAGC
GGCAACCCGG CCAAGATGCC TGCCAATCGC GACGACGCCA TCGCCCTGAC GCGCGACCTG
TTCGAAGCCG ACGGCAAGCC GCTGAAGAGC CGGGCGCTGA AGGTCGGTGA GTCGGTTATC
GTCCGCATCA ACGTCAATCC GCGCAGTTGG ATCAATACCG GCATGGTGGT CGATCACATT
CCGGCCGGCC TCGAGATCGA GAATCTCAAC ATCGCTCAGG GCGAGGGCAT GGCCAGCACG
CTGATCAACA ACGTCAATCC GGCCGAGGCG ATGCAGGATC CGCGCATCCA GCACGTCGAG
TTCCGCGATG ACCGTTTTGT GGTTGCGGCC CGTCTGCAGG GCAGGCTCAG CCTGTTCTAC
CGCGCCCGTG TCGTCACGCC CGGCAAATTC GTCTTCCCGC CGATCTACGC GGAAGACATG
TACCGGCCGG ACGTTTACGG CCTAGCGACC GGCGATGCCA CGCTGACGGT GACCGACGGG
AAGGAAAAGC CGGCGGCTGT TCCGGTGCCT GCACCAGCCG CAGCGCCGGC AGTTGTGCCA
ACGCCAGCCC CGGCCAAGCC CTAA
|
|---|
| Protein sequence | MSGLSKSRGF GAVAWLVALA VAIAAVLIYA KPWQSETASA GDGPFEIADF SNRDFEGSPS
LALSFTLPMD AKKGYDEQIQ VFEMPPRPGD AKAQVNESED EGEEGAPGSA NPQVSTEPAD
VATDGGKLIK GAWVVGDNPR ILYFPHIKPQ TRYVVRVAAG LSSLSGQKLN EEGRYSVVTA
TVAPAYYFAS RGTVLPAKQN GGLPVVTVNV PEVDVQFLRV KPDQLPRFLD KVISGPRPQA
RAKRQNNDDY DYDVEYDGDY DWRATSLKGA VNNWSLDSLH NLTESVFVGR FLTEQKPNKR
NVTFLPVEDI KELREPGIYI AVMSQPNRFR YDYQVTYFYV SDLGLSTRLF AKGADAYVSS
LTTGKAVSGV EVAWMDENAK VVGRAETDSS GRANFAERPA AAKVIIARHG QQISMVTLKE
PALDLSEYDV AGLPGRPVRL FAYSGRNLYR PGEKFDISVL ARDADGRPVP AQPIQAILRR
PDGKSQFTAT WQPDAKLGGY YQSRIELPVD AATGAWTLEL RADPADKLAT TSFRFGVEEF
LPERMKLDLN SKQATVSPDE SLKIDIKGAY LYGAPAAGNQ LLGVAVFERQ KNPLAQKLPG
FEFGDTNEDS QRQRVELEQN QLDENGDLAL EVDLAPAKGK RSPYTVRTTL SLLESGGRPV
VRNFERVIWP APVLVGVRPL FTGDYAREGS VAQFEVIRAN AEAKLHGGKA LPVRLFRENR
DYYWRFDDQR GWHSGFTETD ELVDTTVVSI PDGSRGKLGL PVKYGRYRVE ITDSETGQIT
KYRFYAGWSA RGDETQGVRP DRVALKFDKP AYKDGETAKL TITPPHAGEA LVTVEADKTL
WLKRVSVPLE GTTIDIPVDK DWKRHDLYVS AVVLRPGSAG EKVTPARALG LTHLPLERGD
RKLAVSLDAP KKMLPDTRLK VKVKVPGLTG QQAVVTLSAV DVGILNITRY ATPDPHGHFF
GKLRYGADQY DVYGRLIEKM GGQKGKLKFG GDAAPKATKS LPKKVRLVDL FSGPVQLNEQ
GEAEIGLDVP DFNGTLRLMA VVAAPDKFGS AEAETIVAAP LVAELMTPRF LTVGDNATIA
LDLHNLSGVA QKLKVRIENA DGLKIQNAER ELELKDQQKQ TLRFPLEAGN AFGLADVRVV
VSSAAGLKLE RSFGLQVQAA TPQQQVLKML AVGPGETVEV KEAELGGFLK STVQSHLILS
DKAPIDVRSA IQGLLTYPYG CAEQTTSTAY PHVLVDEEGA KLFGLKPYSR DQRADMLEKA
IAKLGAMQAP NGGFSLWGNM SEYQYWLSAY ISNFLLDARE QGFKVPEAMQ KNAMEFLLKN
LQEGAAGLPS GKVTYNQNGW QDYRYGGSGR FGVLAYGAYV LSREAKAPLS TLRQMFDLRE
QAHSGLALVH LGLALKLMGD ETRAQTALAE GVKKSRDTGY WWGDYGSPLR DAALSYALLD
RHKLKVEGQD NLVAVAAAEL GKNRYTSTQE KLALFLLGRN FAKAGEGEAG WTAEVLGKEK
PETINGSGTL IRPLSAAALQ GGVRIKNTHK ERLYLQLAYS GNPAKMPANR DDAIALTRDL
FEADGKPLKS RALKVGESVI VRINVNPRSW INTGMVVDHI PAGLEIENLN IAQGEGMAST
LINNVNPAEA MQDPRIQHVE FRDDRFVVAA RLQGRLSLFY RARVVTPGKF VFPPIYAEDM
YRPDVYGLAT GDATLTVTDG KEKPAAVPVP APAAAPAVVP TPAPAKP
|
|---|
| |