Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0325 |
Symbol | rpsC |
ID | 3567071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 369017 |
End bp | 369802 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637678767 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_283554 |
Protein GI | 71905967 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 3.85995e-16 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000469297 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGGACAGA AAATTCATCC GACTGGCTTC CGCCTGGCAG TCACCAAAAA CTGGAGTTCG CGCTGGTACG CTAACAGCAA AGACTTCCCT GGCATGTTGA ACGAAGACAT CAAGGTTCGT GAATATCTGA AGCGCAAGCT CGCGCACGCT TCAGTTGGTC GTGTCCTGAT CGAACGTCCG GCAAAGAATG CCCGCGTCAC CGTTTACTCC GCCCGTCCGG GTGTCGTTAT CGGTAAGAAG GGCGAAGATA TCGAGCAACT GCGTACGGAC CTTCAGCGCA TCATGGGCGT TCCCGTCCAT GTGTCGATCG AAGAAATCCG CAAGCCGGAA ATCGATGCGC AGTTGATCGC TGATTCGATT GCGCAACAAC TCGAAAAGCG CATCATGTTC CGTCGTGCCA TGAAGCGCGC GATGCAGAAC GCCATGCGTC TTGGTGCTCA AGGTATCAAG GTGATGAGCG CTGGTCGTCT GAACGGTGCA GAAATTGCCC GTAGCGAGTG GTATCGCGAA GGTCGTGTGC CGTTGCACAC CCTGCGCGCC GACATCGACT ATGCAACCTC TGAAGCGCTG ACCACTTACG GCATTATCGG TATCAAGGTC TGGGTTTACA AGGGCGACAT GCTTGATCGT AATGAGCAAC CGGTGGCAGA AGAACCGGCT GCCGATGACC GTCGTCCGCG TCGTACCCCG GGCAGGCCCG ATGGTGACAA GCCGCGTACC CGTACCGTCA AGAAAGTTGA CGGTGCAGCT GATCCGGCCA AGCGCGTAAG AAAGGCAGGT GCTTAA
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Protein sequence | MGQKIHPTGF RLAVTKNWSS RWYANSKDFP GMLNEDIKVR EYLKRKLAHA SVGRVLIERP AKNARVTVYS ARPGVVIGKK GEDIEQLRTD LQRIMGVPVH VSIEEIRKPE IDAQLIADSI AQQLEKRIMF RRAMKRAMQN AMRLGAQGIK VMSAGRLNGA EIARSEWYRE GRVPLHTLRA DIDYATSEAL TTYGIIGIKV WVYKGDMLDR NEQPVAEEPA ADDRRPRRTP GRPDGDKPRT RTVKKVDGAA DPAKRVRKAG A
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