| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0320 |
|---|
| Symbol | rplD |
|---|
| ID | 3569774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 366633 |
|---|
| End bp | 367256 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637678762 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_283549 |
|---|
| Protein GI | 71905962 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 2.18695e-20 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000667461 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCA AGGTTATTAA CGAACAAGGT CAGGAAGCTG CCAAGCTGCA GGCTTCCGAT
GTACTGTTCG GTCGCGATTT CAATGAAGCG TTGGTGCACC AGATCGTTGT CGCCTATCAG
GCGAATGCTC GTTCTGGCGA CCGTCAGCAA AAGGATCGCT CCGAAGTCCG TCACACCACC
ACCAAGCCGT GGCGTCAGAA GGGCACCGGT CGTGCTCGTG CTGGTTCCAA TGGCAGCCCG
CTGTGGCGCG GAGGCGGTCG GATTTTTCCG AACTCTCCTG AAGAAAACTT CAGCCAGAAG
GTTAACAAGA AGATGTTCCG CGCCGGTATG GCTGCGATCC TCTCCGAGTT GGCCCGTCAG
GACCGTCTCG TCGTTATCGA CGATCTGTCT GTCGATGCGC CCAAAACCAA GCTGTTCACG
CAGAAGCTGA AGAGCATGGG TCTTGAAGGC AATCTTCTGG TCATCACCGA CGAGCTGAAC
GAAAATCTGT ACCTCTCGTC GCGCAACCTG CCTAACGTTC TGGTTCTCGA AGCTCAGGAA
GCCGATCCGG TTTCTCTGGT CCGCTTCGCC AAGGTTCTGG TTACCAAGAA CGCCGTGGCC
AAGTTCGAGG AGATGTGGGG ATGA
|
|---|
| Protein sequence | MELKVINEQG QEAAKLQASD VLFGRDFNEA LVHQIVVAYQ ANARSGDRQQ KDRSEVRHTT
TKPWRQKGTG RARAGSNGSP LWRGGGRIFP NSPEENFSQK VNKKMFRAGM AAILSELARQ
DRLVVIDDLS VDAPKTKLFT QKLKSMGLEG NLLVITDELN ENLYLSSRNL PNVLVLEAQE
ADPVSLVRFA KVLVTKNAVA KFEEMWG
|
|---|
| |