| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0312 |
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| Symbol | rpoB |
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| ID | 3569766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 352552 |
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| End bp | 356835 |
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| Gene Length | 4284 bp |
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| Protein Length | 1427 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637678754 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_283541 |
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| Protein GI | 71905954 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0286177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTACT CCTTCACCGA GAAGAAACGC ATCCGCAAGA GCTTCGCCAA GCGCGCCAGC
GTGCTGGACG TTCCCTACTT GTTGGCCACT CAACTGCAGT CCTTCAAGGA CTTTTTGCAA
GACGAAGTGG CTCCCGAGAA GCGGAAAAAC GAGGGTTTGC AGGCTGCGTT CACCTCGATC
TTCCCGATTG TTTCGCATTC CGGCAATGCC CGTCTGGAAT TCGTCAGCTA CATGCTGGGC
GAGCCGGCGT TCGACGTTAC CGAATGTCAG CAGCGTGGTT TGACCTTTGC TTCTTCGCTG
CGCGCGCGGG TTCGCCTGGT CATCATGGAC CGCGAAGCGC CCGACACGGT AAAGGAAGTG
AAAGAGCAGG AAGTCTACAT GGGTGAAATT CCCCTGATGA CAACCAATGG CTCCTTCGTG
ATTAATGGTA CCGAGCGTGT CATCGTTTCC CAGCTCCACC GTTCCCCAGG CGTGTTTTTC
GAACACGACC GCGGCAAGAC GCACAGTTCA GGCAAGTTGC TGTTCTCGGC GCGCGTAATT
CCTTACCGTG GCTCCTGGCT GGATTTCGAG TTTGATCCCA AGGACACGCT CTTCTTCCGC
GTAGACCGTC GTCGCAAGAT GCCGGTCACC ACGTTGTTGA AGGCCATCGG CATGTCGTCC
GAGGAGATTC TCGACCAGTT CTTCGATTTT GATACTTTCC TGCTGTCCAA GGACAAGGTC
GAATTTACGC TGGTTCCGGA GCGTCTGCGC GGTGAAGTAG CTCGCTTTGA TTTCGTGGGT
CCGGATGGTG TCTTGATTGT TCCGAAGGAC AAGCGCATCA CCGCCAAGCA CATTCGCGAC
ATCGGTGCCG CTGCGATCAA GCAGATCGTT GTGCCTGAAG ATTTCCTGAT TGGCCGTGTG
GTTGCCAAGA ATATTGTCGA CAAGGCCACG GGTGAAGTTG TCGCCAATGC CAACGACGAA
ATCACCGAGA CCTTGTTGGC CAAGCTGCGT GAGGCCGAAA TTACGACGGT CGAGACGCTG
TATACCAACG AACTTGATCG CGGTGCTTTC ATCTCCAATA CGCTGCGTGC GGATGAAACG
GCAACGCGTC AGGCAGCTCG TGTCGCGATT TATCGCATGA TGCGTCCGGG CGAACCGCCG
ACGGAAGAAG CGGTTGAAAT CCTGTTTAAC GGCCTGTTCT ATTCCGACGA GCGTTACGAT
TTGTCCGGCG TTGGCCGGAT GAAGTTCAAC CGCCGTCTGG CGCGTCAGGA TGTCATTGAA
TACAAGCTGA TGGTCAAGGG CTTGGCCTCC AAGGCTGAAG CGGCGCTGAA GAATCTTGCT
GAAGCTTCTG GTTTTGCCCT GTCGGCCATT CAGGATCTGG TCAGCCTGAT GCCGTTCGGT
GCTCGTGCCA TGGTCGAAAA CTCGACCCTG AGCGAAGTCG AAGCACTGGC TGCCAAACTG
AAGCCGCTGG GTGCCAATGT CGAAGTCCGC GAACAGTTGA CGCTGTCGCC GCGCGATATC
GTTGAAGTCA TCAAGATTCT CGTCGAACTG CGTAATGGCC GTGGCGAAAT CGACGACATC
GATCACCTCG GTAACCGCCG CGTCCGTTCA GTCGGTGAAT TGGCCGAGAA CCAGTTCCGT
GCCGGTCTGG TCCGTGTCGA GCGTGCCGTC AAGGAACGTC TGTCGCAAGC CGAATCCGAC
AATCTGATGC CGCATGACCT GATCAACGCC AAGCCGATCA GTGCCGCCAT CAAGGAATTC
TTCGGATCGA GCCAGCTGTC GCAGTTTATG GACCAGACCA ACCCGCTGTC GGAAATTACG
CACAAGCGTC GTGTTTCCGC ACTGGGCCCT GGCGGTCTGA CGCGCGAACG TGCTGGCTTC
GAAGTGCGCG ACGTGCATCC GACGCACTAC GGTCGTGTTT GCCCGATCGA AACACCGGAA
GGCCCGAACA TCGGCCTGAT CAACTCCCTG GCGTTGTTTG CACAGGTCAA TAGCTACGGC
TTCATCGAAA CCGCTTACCG CAAGGTAAAT AACGGTCAGG TGACCAGCGA CATCGAATAC
CTCTCGGCGA TCGAAGAAGG CAACTATGTG GTTGCCCAGG CTAACGCCTC GCTGGATGCG
AATGGCCGTT TGTCCGACGA TCTGGTGACC TGCCGCGAAA AAGGCGAAAC CATTCTGGCC
GAACCGGGCC GTGTTCAGTA CATGGACGTG GCACCGGGCC AGATCGTATC GGTTGCTGCC
TCGCTGATTC CATTCCTTGA GCACGATGAC GCAAACCGCG CATTGATGGG CGCCAACATG
CAGCGTCAGG CTGTGCCTTG TCTGCGTCCG GAAAAGCCGC TGGTCGGCAC CGGCATCGAG
CGCACCGTTG CTGTTGACTC GGGTACTGCT GTAGTCGCCC TGCGCGGTGG TATGGTCGAT
TACGTCGATG CCGCACGTGT CGTGGTTCGC GTCAATGACG ACGAAACCAT CGCTGGTGAA
GTTGGTGTCG ATATCTACAA CCTGGTCAAG TACACCCGTT CCAACCAGAA CACCAACATC
AATCAGCGTC CGATGGTGCG TGTGGGTGAC CACATCGCCA AGGGCGACGT GGTGGCTGAC
GGCGCATCTA CTGACAAGGG CGAACTGGCT CTCGGTCAGA ACATGCTGAT CGCCTTCATG
CCGTGGAATG GCTACAACTT CGAAGACTCG ATCCTGATCT CCGAGCGCGT CGTTGCAGAA
GACCGTTACA CCTCGATTCA CATCGAGGAA CTGACGGTGG TCGCTCGTGA CACCAAGCTC
GGCCCTGAGG AAATCACCCG TGACATCGCG TCGCTGGGTG AGGCTCAGCT GTCCCGTCTG
GATGATTCCG GCATCGTCTA TATCGGCGCC GAAGTCGAAG CCGGTGACGT GCTGGTGGGC
AAGGTCACGC CGAAGGGCGA AACCCAGCTG ACCCCGGAAG AGAAGCTGCT GCGCGCCATT
TTCGGCGAGA AGGCATCGGA CGTTAAAGAC ACCTCGCTGC GCGTGCCGTC CGGCATCGCC
GGTACCGTCA TCGACGTCCA GGTCTTTACC CGCGAAGGCA TCGAGCGTGA CAAGCGCGCT
CAGGCCATCA TTGACGAGCA CCTGCGCCAT TACAAGCTGG ACCTCGCTGA CCAGATGCGT
ATCGTTGAGC GCGATGCTTT TGCTCGTGTT GAGCGCCTGA TTACCGGCAA GAAAGCGAAT
GGCGGTCCGA AGAAACTGGC CAAGGGCACG GTGATCGACA AGGTGTACCT CGACAGCATG
GATCCGCACC ACTGGTTCGA TATCCGTCTG GCCGATGACG AAGCTGCCCA GCAACTGGAA
CAGGTCAAAG ATGGCCTGGA GCAGGCGCGC AAAGACTTCG ACATTGCCTT CGAAGGCAAG
CGCAAGAAGC TGACGCAGGG CGACGAATTG CCGCCGGGCG TCCAGAAGAT GGTCAAGGTC
TATGTTGCGG TCAAGCGTCG CCTGCAGCCA GGTGACAAGA TGGCCGGTCG TCACGGTAAC
AAGGGTGTTG TATCGCGCAT CCTGCCGGTC GAAGACATGC CGCACATGGA AGATGGCAGC
CCGGTCGACA TCGTTCTGAA CCCGCTCGGC GTGCCGTCCC GGATGAACGT TGGTCAGATT
CTGGAAGTTC ACCTCGGCCT CGCCGCCAAG GGCCTTGGCC ACAAGATTGG TGCGATGCTC
CGGGCCCAGT CCAGCGCCAA GGAAGTTCGC GGCTTCCTTG ACCAGATTTA CAACTCCAGC
GGCAAGTCCG AGAACCTTGA CGAGTTGAAC GATGTCGAAG TTCTGGAAAT GGCAGAAAAT
CTGAAGGGTG GCGTGCCGTT CGCGACGCCG GTGTTCGATG GTGCCAAGGA AGAAGAAATC
AAGGCGATGC TGGCGATGGC CGGTATGCCC TCTTCCGGCC AGATGACCTT GTTTGACGGT
CGCACTGGCG AAGCTTTCGA GCGCAAGGTG ACGGTTGGTT ACATGCACTA CCTGAAGCTG
CACCATCTGG TCGATGACAA GATGCATGCC CGTTCGACTG GTCCGTACTC CCTGGTTACC
CAGCAGCCGC TGGGCGGCAA GGCGCAGTTC GGTGGTCAGC GCTTCGGTGA AATGGAAGTG
TGGGCACTGG AGGCGTATGG CGCGTCCTAC GTGCTGCAGG AAATGTTGAC CGTGAAGTCC
GACGATGTGA ACGGCCGTAC CAAGGTTTAC GAAAACATCG TCAAGGGCGA GCATCGCATC
GAAGCCGGCA TGCCGGAATC CTTCAATGTG CTGGTCAAGG AAATCCGTTC GCTGGCGATC
GATATCGATC TGGAACGTTA CTGA
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| Protein sequence | MTYSFTEKKR IRKSFAKRAS VLDVPYLLAT QLQSFKDFLQ DEVAPEKRKN EGLQAAFTSI
FPIVSHSGNA RLEFVSYMLG EPAFDVTECQ QRGLTFASSL RARVRLVIMD REAPDTVKEV
KEQEVYMGEI PLMTTNGSFV INGTERVIVS QLHRSPGVFF EHDRGKTHSS GKLLFSARVI
PYRGSWLDFE FDPKDTLFFR VDRRRKMPVT TLLKAIGMSS EEILDQFFDF DTFLLSKDKV
EFTLVPERLR GEVARFDFVG PDGVLIVPKD KRITAKHIRD IGAAAIKQIV VPEDFLIGRV
VAKNIVDKAT GEVVANANDE ITETLLAKLR EAEITTVETL YTNELDRGAF ISNTLRADET
ATRQAARVAI YRMMRPGEPP TEEAVEILFN GLFYSDERYD LSGVGRMKFN RRLARQDVIE
YKLMVKGLAS KAEAALKNLA EASGFALSAI QDLVSLMPFG ARAMVENSTL SEVEALAAKL
KPLGANVEVR EQLTLSPRDI VEVIKILVEL RNGRGEIDDI DHLGNRRVRS VGELAENQFR
AGLVRVERAV KERLSQAESD NLMPHDLINA KPISAAIKEF FGSSQLSQFM DQTNPLSEIT
HKRRVSALGP GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL ALFAQVNSYG
FIETAYRKVN NGQVTSDIEY LSAIEEGNYV VAQANASLDA NGRLSDDLVT CREKGETILA
EPGRVQYMDV APGQIVSVAA SLIPFLEHDD ANRALMGANM QRQAVPCLRP EKPLVGTGIE
RTVAVDSGTA VVALRGGMVD YVDAARVVVR VNDDETIAGE VGVDIYNLVK YTRSNQNTNI
NQRPMVRVGD HIAKGDVVAD GASTDKGELA LGQNMLIAFM PWNGYNFEDS ILISERVVAE
DRYTSIHIEE LTVVARDTKL GPEEITRDIA SLGEAQLSRL DDSGIVYIGA EVEAGDVLVG
KVTPKGETQL TPEEKLLRAI FGEKASDVKD TSLRVPSGIA GTVIDVQVFT REGIERDKRA
QAIIDEHLRH YKLDLADQMR IVERDAFARV ERLITGKKAN GGPKKLAKGT VIDKVYLDSM
DPHHWFDIRL ADDEAAQQLE QVKDGLEQAR KDFDIAFEGK RKKLTQGDEL PPGVQKMVKV
YVAVKRRLQP GDKMAGRHGN KGVVSRILPV EDMPHMEDGS PVDIVLNPLG VPSRMNVGQI
LEVHLGLAAK GLGHKIGAML RAQSSAKEVR GFLDQIYNSS GKSENLDELN DVEVLEMAEN
LKGGVPFATP VFDGAKEEEI KAMLAMAGMP SSGQMTLFDG RTGEAFERKV TVGYMHYLKL
HHLVDDKMHA RSTGPYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGASY VLQEMLTVKS
DDVNGRTKVY ENIVKGEHRI EAGMPESFNV LVKEIRSLAI DIDLERY
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