Gene Daro_0290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_0290 
Symbol 
ID3570176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp331363 
End bp332238 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content62% 
IMG OID637678728 
Productbranched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase 
Protein accessionYP_283519 
Protein GI71905932 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01121] D-amino acid aminotransferase 


Plasmid Coverage information

Num covering plasmid clones62 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.736627 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCCT ACGTCGCCGA TCCCGTCTAC CTGAATGGCC GTTTCCTGCC GTTGGCGGAA 
GCGGGTATTT CCCCACTCGA CCGGGGTTTT CTATACGGCG ACGGCGTCTA TGAAGTGATC
CCGGTCTATT CCCGCCGGGC TTTCCGCATC GACGAACATG TCAAGCGTCT GCAAGCGACA
CTGGACGGCA TCAAGCTGGC CAACCCGCTG ACCGCCGACG GCTGGAAGGA AGTCATTGCC
AAGCTGATCG AAACTGCCCC CTGGGACGAC CAGTCGATCT ATCTGCAAGT CACCCGCGGC
GCCGACGACA AGCGTGACCA CGCCTTCCCG CCGGCCTCGA TACCATCGAC AGCCTTTGCC
TTCGCTTCGC CGCTGGTCAC CACGCCCGCC GAGGTCCGCG CCAAGGGCGT CGCCGCGATC
ACCGTGCCCG ATCTTCGCTG GTCGCGCTGC GACCTCAAGG TCATCTCGCT GCTCGCCAAC
GTGCTGGCCC GCCAGCAAGC CGTCGATCAA GGCTGTGCCG AGGCACTGTT GATTCGCGAC
GGTTTCATGA AAGAAGGCGC TGCCTCCAAC ATCTTCATCG TCAAGGACGG CGTGCTGGTC
GCCCCGCCCA AGACGCACCT GATGCTGCCG GGCATTACCT ACGACGTGAT CCTCGAACTG
GCGGCGACCC ACCAGCAGGC TTTGGCAGTA CGCGAAATCA GCGAAACTGA ACTTCGTGGC
GCCGACGAGG TCTGGATGAC CTCATCGACC AAGGAAATCC TGGCAATCAC GACGCTCGAT
GGCGAGCCAG TCGGCACCGG CAAACCCGGC CCGTTCGGCG AGCAGATGTG GCAGTGGTAT
CAGGATTTCA AGAACACCGT AATGCGTAAA GGCTGA
 
Protein sequence
MTPYVADPVY LNGRFLPLAE AGISPLDRGF LYGDGVYEVI PVYSRRAFRI DEHVKRLQAT 
LDGIKLANPL TADGWKEVIA KLIETAPWDD QSIYLQVTRG ADDKRDHAFP PASIPSTAFA
FASPLVTTPA EVRAKGVAAI TVPDLRWSRC DLKVISLLAN VLARQQAVDQ GCAEALLIRD
GFMKEGAASN IFIVKDGVLV APPKTHLMLP GITYDVILEL AATHQQALAV REISETELRG
ADEVWMTSST KEILAITTLD GEPVGTGKPG PFGEQMWQWY QDFKNTVMRK G