Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0133 |
Symbol | |
ID | 3569539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 147199 |
End bp | 149283 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637678568 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_283362 |
Protein GI | 71905775 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTC TCACCCTCCG CCATCGCCTG CTGTTGCTAA CGCTGCTCCC CAGCACGTTA ATTGCCATCG CCCTGGTCAC TTATTTCACC TTCAGCGGCA TCAAGACGCT GGAAGGTGAA CTTCGCCTCA AGGGCATGGC CACCGTCCGC TACCTGGCTC CGATCAGCGA ATACGGAATC ATCGCGGGTC AGGTTGAAGG GCTGCACGGG CTAGCCCAAG CTACCGTCCA GGAATCCGGC GTCAAGGCGG CCATCGTCGT TAATCAGAAA GGCCGCACTA TCGCCGTTAG TGGCCGGGTT TCACTGGCGG CTGACGAGCT TCGCCAGATT CTGAGCGAAC CCAAGCAAGT CGCCGAAACC GACCAATGGA TCGCCTTTGG CGCACCGGTA AAACGCTCGA TGAGCGACAC CGACCAGCTC TTTGAAACCA ATGCCGGCAA GCCCGCCATT CCCGAAGTCA TCGGTCACGT CTTTGTCGAG TTCGACAAGA CCGAGTTGGC CAACAAGCAA CGCCAGCTCC TGCAGCGCGG CTTGGTCATC GTCCTCCTGG GTTTGCTCGT ACTCGCTGCC ATGGCCATCG CCATGGCGGA CAATCTGGCC AAGCCCGTCA TGCGCCTGGT TCAGGCCGTG AAAGACATGT CGTCCGGCCG GCTGGACACC CGTGTGCCAG CCAGCTCCAG TGGTGAACTC GGCGTCCTCG AAAATGGCTT CAACGAAATG GCGGCAAAGA TCGAGGAAGT GCATCACTCG ATGCAGACCC GGATCGAGGA GGCTACCGCC CAACTCGCCT TCCAGGCTCG CCACGACGCA CTAACCGGCC TGCTCAACCG GCGAGAATTC GAGCACCGCC TGGAAAAAGC ACTGGCCAGC GTTCAGGCCG GCGGTGACGA ATTTGCCATC CTGTTCCTCG ACCTCGACCG ATTCAAGCAG GTCAATGACA CCTGTGGCTA TCTGGCCGGC GACGAACTGC TACGCCAGAT GGCGCTGCTC TTCCAGGGCC GCTTGCGCGA GGAAGACACT TTGGCTCGAC TGGGCGGTGA CGAATTCAGC ATCATGCTGG CCAACTGCAC CGGCGCGCGC GCCTTGCAAG TCGCCGATGA CATTTGCGGC CTTGCCGCCG CCTATCGCTT TATCTGGCAG GACAAGGTTT TCGCCATCGG CGCCAGCGTT GGCATCACCA CGGTCAACCG CAAGGTGCGC AACATCAACG AAATCCTCGC CGCCGGCGAT GCCGCCTGCC ATCGCGCCAA AGAAAGCGGC CGCAACCGTG TCTGCGAACA AGAAGTGACC TTCAATCAGG AACGCCGCCA TGAAGCCAGC AATTGGGCCA GTCGCATTGC CAATGCCCTC TCCGAGGACC GGTTGCTGGT CGAGGCAGTG CCCTTGCGCG CCCTCCAGCA CGCTGCCAGC GGACATGTCG TCGAACTGAC GGCTCGCCTC AACGAGCCTG GCCAGCCCCC AGTCGCCCTC GCCGCACTGA TCGACGCAGC CGAACGCTAT GACCTGGCGC CCGCCATCGA CCGACGCCTG ATCGATACCG CCATCGCGGC GCAGGCGCGC GCCAAACGTC AGCATCGCAA CCTGTATTGC CTAGTGCCGC TCTCACGTAG CTCGATCAGC AGCCGGGAAA CAATCGACTA CATCGCCCGC AGCCTGTCCA GCCAGAACAT GGCCGGCAAC AAACTCTGCT TCATGTTTTC CGAAGACATC CTGACCCATC TGACCAGTCA GGCCATGGAA TTCTCTCGCC AAGTACATAC CCTTGGTTGC CAGATTGGTC TGGACGATTT TGGTGGGGGG CTATCGTCTT TCAGCCACCT GCGCAGCATC ACCCCCAGCC ACGTCAAGCT GAGCCGCAGC CTGACCCGGG ATCTTGGTGG CAACCGGGCG TCTACCGCCT TGCTGCGGGC AGTTCAGGAA ATTACGGCGG ACCAGCACAT CCGTTCGATC GCCGAAGACA TCGACGATCT GGATACGCTG GAACAACTCA AGGATCTCGG GATCGATTAC GCGCAGGGCA AGGCCATCGC GCCCAACGAG CCCTTCGAAG TCTGGTTTGA AGGCGCTGTC ATGCGCTCAG GCTAG
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Protein sequence | MNRLTLRHRL LLLTLLPSTL IAIALVTYFT FSGIKTLEGE LRLKGMATVR YLAPISEYGI IAGQVEGLHG LAQATVQESG VKAAIVVNQK GRTIAVSGRV SLAADELRQI LSEPKQVAET DQWIAFGAPV KRSMSDTDQL FETNAGKPAI PEVIGHVFVE FDKTELANKQ RQLLQRGLVI VLLGLLVLAA MAIAMADNLA KPVMRLVQAV KDMSSGRLDT RVPASSSGEL GVLENGFNEM AAKIEEVHHS MQTRIEEATA QLAFQARHDA LTGLLNRREF EHRLEKALAS VQAGGDEFAI LFLDLDRFKQ VNDTCGYLAG DELLRQMALL FQGRLREEDT LARLGGDEFS IMLANCTGAR ALQVADDICG LAAAYRFIWQ DKVFAIGASV GITTVNRKVR NINEILAAGD AACHRAKESG RNRVCEQEVT FNQERRHEAS NWASRIANAL SEDRLLVEAV PLRALQHAAS GHVVELTARL NEPGQPPVAL AALIDAAERY DLAPAIDRRL IDTAIAAQAR AKRQHRNLYC LVPLSRSSIS SRETIDYIAR SLSSQNMAGN KLCFMFSEDI LTHLTSQAME FSRQVHTLGC QIGLDDFGGG LSSFSHLRSI TPSHVKLSRS LTRDLGGNRA STALLRAVQE ITADQHIRSI AEDIDDLDTL EQLKDLGIDY AQGKAIAPNE PFEVWFEGAV MRSG
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