| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0054 |
|---|
| Symbol | |
|---|
| ID | 3567816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 62898 |
|---|
| End bp | 64397 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637678483 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_283283 |
|---|
| Protein GI | 71905696 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.0265828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.286755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCT TACTCGCATT GCTGGCCCTG GTCGGCGCCG TAGGTTTCGG CGCCCCAGCC
TGGGCCGAAG AAAAAGCTGC AGCGCCCGAA GCTGTTGCAG CTACCGCCCC GGCCGCAGCG
CCGGCTGCGG CGGCGCCTGC CGCAGCACCC GCTGCTGCCG CACCTGCCGC TGCTCCTGCC
GCGGCACCGA TCCCGCCGAA CAAGGGCGAT AACGCCTGGG TGATGATCAG CGCTGCGCTG
GTCATCCTGA TGTCCATCCC GGGTTTGGCC CTGTTCTACG GTGGCCTGGT TCGCACCAAG
AACATGCTGT CGGTGCTGAT GCAGGTGTTC GTCACTTTCT CGCTGATTTC GGTCCTCTGG
GTGGTCTATG GCTACTCGGC CGCCTTCACC GAGGGGAACG AGTTCTTCGG CGTGCTCGAC
AAGCTGTTCC TGAAGGGCGT GACGGTCGAT TCCGTGGCGG CCACCTTCTC CAAGGGTGTG
AACATCTCCG AGTTTGCCTA CGTGATCTTC CAGGGTGCCT TTGCGGCCAT TACCTGCGGC
CTGATCGTCG GCGCCTTCGC TGAACGAGCC AAGTTTGCCG CCATCCTGGT CTTCATGGTG
ATCTGGTTCA CGTTGTCCTA CATCCCGATG GCTCACATGG TCTGGTACTG GGCGGGTCCG
GATGCCTACA TCGATGCTGC TGCTGGCGAG TTGGCCGGCA AGACGGCTGG CTTCCTGTTC
CAGAAGGGTG CGCTCGACTT CGCCGGCGGT ACCGTGGTGC ATATCAACGC CGCCATTGCC
GGTCTGGTTG GTGCCTACAT GGTGGGCAAG CGTAGCGGTC TGGGCAATGT CTCGATGGCC
CCGCACTCCC TGACCTTGAC GATGATTGGT GCATCCTTGC TGTGGTTTGG CTGGTTCGGC
TTCAACGCCG GCTCCGCCCT CGAAGCCTCT GGCGGTGCTG CGCTGGCCAT GGTCAACACC
TGGGTTGCGA CGGCTTGCGC CGCACTGTCC TGGATGTTTG CTGAATGGAT CCTGAAGGGC
AAGCCTTCCA TGCTGGGTGC TGCTTCCGGT GCCGTCGCCG GTCTGGTGGC GATCACTCCG
GCCGCCGGCT TCGTCGGTGT GATGGGCTCC ATCATCATCG GCCTGCTGGC TGGCGTGGTC
TGCCTGTGGG GTGTCAATGG CCTGAAGAAG CTGCTGGGCG CAGACGACTC CCTCGACGTG
TTCGGCGTCC ATGGTGTCGG CGGCATCCTT GGCGCCATGC TGACCGGTGT CTTTGCTGAT
CCGGCCCTGG GTGGCACGGG CGTCTATGAC TATGTGGCCA ACGCCGTTGG TCCTTACGAC
ATGACTGCCC AGTTGATCTC CCAGGCCTGG GGCGTCGGTA CCGTGATCGT CTGGTCCGGC
GTCGTCTCCA TCGTTGCCTA CAAGCTGGTC GATATCGTGA TTGGTCTGCG TGTGCCGGAA
GAAGAAGAGC GTGAAGGTCT CGACCTTACC TCGCACGGTG AAACCGCTTA CCACCACTAA
|
|---|
| Protein sequence | MKRLLALLAL VGAVGFGAPA WAEEKAAAPE AVAATAPAAA PAAAAPAAAP AAAAPAAAPA
AAPIPPNKGD NAWVMISAAL VILMSIPGLA LFYGGLVRTK NMLSVLMQVF VTFSLISVLW
VVYGYSAAFT EGNEFFGVLD KLFLKGVTVD SVAATFSKGV NISEFAYVIF QGAFAAITCG
LIVGAFAERA KFAAILVFMV IWFTLSYIPM AHMVWYWAGP DAYIDAAAGE LAGKTAGFLF
QKGALDFAGG TVVHINAAIA GLVGAYMVGK RSGLGNVSMA PHSLTLTMIG ASLLWFGWFG
FNAGSALEAS GGAALAMVNT WVATACAALS WMFAEWILKG KPSMLGAASG AVAGLVAITP
AAGFVGVMGS IIIGLLAGVV CLWGVNGLKK LLGADDSLDV FGVHGVGGIL GAMLTGVFAD
PALGGTGVYD YVANAVGPYD MTAQLISQAW GVGTVIVWSG VVSIVAYKLV DIVIGLRVPE
EEEREGLDLT SHGETAYHH
|
|---|
| |