| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0043 |
|---|
| Symbol | |
|---|
| ID | 3567805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 50052 |
|---|
| End bp | 50768 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637678472 |
|---|
| Product | cell wall hydrolase/autolysin |
|---|
| Protein accession | YP_283272 |
|---|
| Protein GI | 71905685 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 75 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.3967 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTG TCCGCTTCCT GATATCCCCC TTCTTCCTGA TGGCGACGGC AGTGATCGCC
GCGCCACCGC TGGTTGCGGT GGATGTCGGC CATGGCGGCA AGGATACGGG GGCGATCAGC
GCCCGTGGGC GAACAGAATT CGAGTTCAAT CGGGACTTTG CCGGGCGACT GGCGGCAACG
TTGCGCGAGC ATGAGCTAGG TGTTCTGGAA GTCAATTTCG ACGGCAAGAT CGGCAGTCTG
GCCGCTCGTC CGGCCGCGGC GATCGGCAGC GATTTCTTCA TCGCCATTCA TCACGACTCG
GTCGGCGAAC CGTGGCTGCT TAACTGGGAG TGGAATGGTC AGCCGCTGCG CTATACCGAG
GTCAAGCGCG GTTTCGGCCT CTTCGTTTCG GCGCAGAACC CGGATCTCGA AACCAGCCTG
CGTTGCGCCT CCACGATCGG CGCCATGATG CGCCGCGCCG GCTTCGTGCC GTCCGACTGG
CATGCCCGCA AGCATGTCCC GGCCGATGCC GAGAATGGTG TCTGGTATTA CGACAATCTG
GTCGTGCTTT ACCGGACGAC CTTGCCGGCC GTGCTGTTCG AGGCCGGGGT CATCAAGCAT
CGCGACGAAG AGCTGGAGTT GCTTGATCCT GAGCGCCAGG CGCGCATGGC CGATGCCGTG
GCCACCGGCA TCGCGGCCTG TCTGTTCGTC AAGGCAAGCG ACACACCCGC TGAATAG
|
|---|
| Protein sequence | MSFVRFLISP FFLMATAVIA APPLVAVDVG HGGKDTGAIS ARGRTEFEFN RDFAGRLAAT
LREHELGVLE VNFDGKIGSL AARPAAAIGS DFFIAIHHDS VGEPWLLNWE WNGQPLRYTE
VKRGFGLFVS AQNPDLETSL RCASTIGAMM RRAGFVPSDW HARKHVPADA ENGVWYYDNL
VVLYRTTLPA VLFEAGVIKH RDEELELLDP ERQARMADAV ATGIAACLFV KASDTPAE
|
|---|
| |