| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0008 |
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| Symbol | |
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| ID | 3570032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 8504 |
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| End bp | 12823 |
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| Gene Length | 4320 bp |
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| Protein Length | 1439 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637678437 |
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| Product | PAS |
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| Protein accession | YP_283237 |
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| Protein GI | 71905650 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.130257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0574671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGAG GAATATCCTT CAGAAAGCCG GGATTCGCCA GCAGCCTGGT ACTGCGTATC
GGCCTGCTGA TTCTGCTTTC ACTCGCCGCC TTCACGATCA GCCTTTACTA CCTGATCGGC
CGGCCAACCG TCGATCGGTT GGCAGAAACC CAGATGCTGC TCGCAGCTGA GCAGTTGGAA
GCCCGCTATA CCCGCCTGTT GAAAACGGTT GAGATCACGC TGCGCAGCAG CCAGGGCTGG
GGAAAAAACA GCGATATCGA TCAGACCCGT CTGCTGCATT TCAACGAGTT TTTCTTCCCC
ATCATCGCCA ACCATGGCGA AATCACCTCG GTCATATTCG CCCATGAATC GGGCCGGGAA
ATTCTCCTGT TGATGACCGA CGACGGTCGC TGGATCAACC GGATCAGCAA CCCGGCCGAC
TGGGGCAACC AGACCTACTG GATCACCTGG GATAAAAACC GCCAGATCGA AAGCGTCGAA
ATGCGGGAGC GCAATTACGA TGCCCGCGAA CGGCCATGGT TCAAGGGGGC GATGGGGCTG
CCCGATGAGC AGAGCGTGTT CTGGACCGAG CCCTATATCT TTTTCACGAC CAAGGAGCCG
GGGATCACGG CGGCCATGCG CTGGCAGGCA GAAGATGGCT CCAGCTACGT CATTGGCCAC
GATGTCCGGC TGATCGACAT CGCCGAATTT ACCACCCGCA TGACGGTCGG ATCGCATGGC
AAGGCCGGGC TGTTTCTGAA GGAAGGCAAG CTGATCGCGC CGCCCCGCGA TCCGCGCTTT
GCGGACCGTA ACGCGATTAA CCAGGCATTG CTGAAAACCT CCGAAGAGCT GGAACTTCCG
GAGTTTGCCG AAGCCTTCAG GCTGTGGCAG ATGGACCCTC ATCCGCTCAA GCGACTGCAC
AGCTTCGATC GACCCGATGG CCGCTGGATC AGCTTCTTCC AGCCGATCTC CGGCAACACC
AGCGGGATTT CGCTGGGTGT CGTGGCCCCG GAAAGCGATT TTGTCCCGAT ATCCAGCCAG
GATCTGATAC TGCTCGGATT GATCACCCTC TCCGCACTCG CTCTGGGCAT GGCAGTCGCC
ATTCGCATTG CGAATCGCTT CGGTGAACCG CTCATTGCAC TGGCCGAAGA CAGTTCGCAA
ATCGGCAGCA TGAATCTGGA TAAACCCGTG ACCACCGACG CCCCTTGGCG GGAGGTGATC
CAGCTTGCTG CCGCCCTCGA GGAAATGCGG CAGCATCTGC AAAGTTCCCG GCGGACGCTT
GAAGACACCA ACATCGAGCT TGAACTCAAG GTGGCCAAGC GCACCCTCGC CTTGCGGCAA
AACCAGGAAA TCCTGCAGAA ACGTGAGGCA TTTTTCCGCG CCATATTCGA CAATGCAGCG
GTCGGCATCA TCAGTCTGGA CCCGGAGCGC AAGCCGGTAC TGGTCAACCC GGCCTTCGCA
AAATTTATCG ACCAGCCGAT CAATACACTG CTTTCGCACC TGGAAAACAT CGCCCTGCCC
AAGGAGGTAC TGGGGCGGAT CAATGATCTG CTCGGCCAAA CAGGCAGCGC CCAGCAGCAG
AGCCTGCGCA ATGAATTCGA ATTCATCGAC AAAAACGGCG ACACCCACTG GGGCGACGTC
CAGATTGCTG CCGTCCGCGA TGAAAATGGC GAGCTCGATT CCCTGCTGAT CACCGTGCTG
GACGTTTCCG ACCGTCGCGA GATCGAAGCC GAGTTGATCC GGCAGTTTTC CTTCCTGCAG
GCACTGCTCG ACACCATCCC CAACCCCATC TTCTACAAGG GCGCGAACAC CCATTTCCTG
GGCTGCAATC AGGCCTACGA AGCGTTTTTC GGGATCAATC GGCGCGAGTT CGTTGGCAAA
CGGGTAGTCG ATCTCGAATA CCTCCCGGAA GATACCCGTC AGGCTTACCA AACTGAAGAC
GAGCAAGTCA TCGAGGCGGG AAGCCGGATT AGTCGCGAAG TGAGCTTGCC AGGCGCGGAC
GGCAAACTGC ATGACGTGCT CTACTCGGTC AGCGGCTTCC ACTCCCCCGA CGGCCGACCG
GATGGCCTGA TCGGCGTCAT CGTCGATATC ACGGCCCTGA AGGAAGCCGA ACGCGAGGCC
GACCGGGCAC GCGCCACGGC AGAATCCGCC GCGGCAGCCA AGGCGGATTT CCTGGCCAAC
ATGAGCCACG AGATTCGTAC CCCGATGAAC GCCATCATCG GCATGACCCA TCTGGCCTTG
CAGACCGAGC TGAATTCCCG CCAGAAAAAT TACCTGACCA AGGTCGACAA CGCAGCCAAG
GGCTTGCTCG GCATCATCAA CGACATCCTC GACCTGTCCA AGATCGAGGC CGGCATGATG
CATTTCGAAC ATGCACCGTT CAGCCTGGAT GCCAGCTTGG AGCGCCTCAG CGACATGTGC
TCCCTGAAAG CCCGCGAACG AGGACTGGAA CTGCTCTACG ACATTGCGCC GGAGGTACCG
GATCAACTGA TCGGCGATTC GCTGCGTCTC GGCCAGGTGT TGCTCAATCT GGTCGGCAAT
GCGATCAAAT TCACCGAAGC CGGTGAAATC ACGGTCACGG TAAAACTGCT CGCCAACCGT
GAAAACGAGG TCGACCTCGG CTTTGAAGTC ATCGACACCG GCATCGGCAT GAATGTTGAG
CAGCAGTCGC AACTGTTTTC CGCTTTTACC CAGGCCGATA CATCGACCAC CCGAAAATAC
GGTGGTACCG GACTTGGTCT TTCCATCTGC AAACGCATCG TCGAGCTGCA GGGCGGCAGC
ATCGGCGTCA GTAGCCAGCC GGGGATCGGT AGCCGCTTTA CCTTCCAGCT GCAGTTTGGA
AGAGCGACGG AGCAAACGGG AACACCACGG CGCATCGGCT TGCCCAACAA TCTGCGCGCC
CTGATCGTCG ACGACAGTCA TGGTGCCTGT GAAGTCTTCC TGCACATGCT CACCGTCTTC
GGGATCGACT GCCATGCCGT CCGCAGCGCA CCGGCAGCGC TGCTCGAACT GGCTGCTGCG
GCTGAAACCG GTCAAGCCTA TGGCCTGCTC ATCATCGACT GGAAAATGCC CGACATGGAT
GGCGTCGAAC TGGTCGAGAA GATCAGTCAG AGCAATGGAC CAGAAAGAAC AGCCGCCATC
GTCATGGCGA CCGCCTACGA CCATGAGGAA CTGCTGGCCG CACTCGGCAA GCACCCCGTC
GGTGCCATCC TCAGCAAGCC GGCGACGCCA TCCTCGCTGT TCGACAGCAT CATGGTCGCG
TTGCATCGTG AGCCGACCAC GCAAATGGTG CCCAACATCA CTCCAACCAT GCTTTCAGAG
CAATTTGCCG GCCGGCACAT CCTGTTGGTC GAAGACAACG AGGTCAACCG GGAATTGGCC
GAGGAAATGC TGGGCAACAT CGGCTTGCTC GTCGACACGG CCGAAAACGG CCAGCAGGCG
ATCGACCGCA TTCGCCAAAA CGCCTACGAC CTGGTGCTGA TGGACTGCCA CATGCCGGTC
ATGGATGGCT ATACCGCGAC CGAATACATC CGCCACGAGT TGAAGTTGCC TCAGCTACCC
ATCATCGCCA TGACAGCCAA TGCTCTGCAC AGCGATCGGG AGCATTGTCT GGCCGTCGGC
ATGGACGACC ATATTCCGAA ACCCATCGAC GTGGCGGTCC TCCATGCCAC CCTGCTGCGC
TGGCTCAGTC AGGCTGGCGA GCGGACAAGC CCATCGCCTC TGCCAGCAGC AAGCCGCGAC
TTGACGTTGC CGGCCGGGGA AATTGATACG GCCACGGCCC TCGCCCGACT GGGTGGCAAC
CGCAGCCTGT ATGACCGCCT GCTTTTGCGC TTCCAGGAAA ACCAGGGCAG CGCAATCGAA
TGCCTGGCGG CCGACCGAAC CAGAGGCGAT AGCGCTGCCA TGATTCTGCG CGCCCACACC
CTGCGCGGCC TGGCCGGCAA TATCGGGGCG ACCGGCCTCT CCCGGCTGGC TGGCGACCTC
GAGGAGCGCC TCAAACAGAA TGCCTCTGTG AAGGAGGCCG GCATCGAAAA CCTGCTGGGC
AGCTTGGCTG AAAACCTGCC CAAGGTTCTG GCCGCCGCCG AAAAGCTGCG CCAGGAAACG
CCGCAGATCA CGCCAGCGCC GCTGCAAGAA GCACAGCAAG GCACCCTATC CGAACTGCAG
CACCTTCTAG ATAATGACGA TGCGGCCGCC GTGCGGTATT TCGAGCAAAT ATCTGCCTGG
CTCAAACAGG AGTTCGAGCC TCGTCTGGTT GATCAACTGG CCCGCCAGAT CAATCAGTAT
GAATTCGATG TAGCCATGGA AACATTGCAG CAAATGACCA TCAACCGGCA ACAAGTCTGA
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| Protein sequence | MPRGISFRKP GFASSLVLRI GLLILLSLAA FTISLYYLIG RPTVDRLAET QMLLAAEQLE
ARYTRLLKTV EITLRSSQGW GKNSDIDQTR LLHFNEFFFP IIANHGEITS VIFAHESGRE
ILLLMTDDGR WINRISNPAD WGNQTYWITW DKNRQIESVE MRERNYDARE RPWFKGAMGL
PDEQSVFWTE PYIFFTTKEP GITAAMRWQA EDGSSYVIGH DVRLIDIAEF TTRMTVGSHG
KAGLFLKEGK LIAPPRDPRF ADRNAINQAL LKTSEELELP EFAEAFRLWQ MDPHPLKRLH
SFDRPDGRWI SFFQPISGNT SGISLGVVAP ESDFVPISSQ DLILLGLITL SALALGMAVA
IRIANRFGEP LIALAEDSSQ IGSMNLDKPV TTDAPWREVI QLAAALEEMR QHLQSSRRTL
EDTNIELELK VAKRTLALRQ NQEILQKREA FFRAIFDNAA VGIISLDPER KPVLVNPAFA
KFIDQPINTL LSHLENIALP KEVLGRINDL LGQTGSAQQQ SLRNEFEFID KNGDTHWGDV
QIAAVRDENG ELDSLLITVL DVSDRREIEA ELIRQFSFLQ ALLDTIPNPI FYKGANTHFL
GCNQAYEAFF GINRREFVGK RVVDLEYLPE DTRQAYQTED EQVIEAGSRI SREVSLPGAD
GKLHDVLYSV SGFHSPDGRP DGLIGVIVDI TALKEAEREA DRARATAESA AAAKADFLAN
MSHEIRTPMN AIIGMTHLAL QTELNSRQKN YLTKVDNAAK GLLGIINDIL DLSKIEAGMM
HFEHAPFSLD ASLERLSDMC SLKARERGLE LLYDIAPEVP DQLIGDSLRL GQVLLNLVGN
AIKFTEAGEI TVTVKLLANR ENEVDLGFEV IDTGIGMNVE QQSQLFSAFT QADTSTTRKY
GGTGLGLSIC KRIVELQGGS IGVSSQPGIG SRFTFQLQFG RATEQTGTPR RIGLPNNLRA
LIVDDSHGAC EVFLHMLTVF GIDCHAVRSA PAALLELAAA AETGQAYGLL IIDWKMPDMD
GVELVEKISQ SNGPERTAAI VMATAYDHEE LLAALGKHPV GAILSKPATP SSLFDSIMVA
LHREPTTQMV PNITPTMLSE QFAGRHILLV EDNEVNRELA EEMLGNIGLL VDTAENGQQA
IDRIRQNAYD LVLMDCHMPV MDGYTATEYI RHELKLPQLP IIAMTANALH SDREHCLAVG
MDDHIPKPID VAVLHATLLR WLSQAGERTS PSPLPAASRD LTLPAGEIDT ATALARLGGN
RSLYDRLLLR FQENQGSAIE CLAADRTRGD SAAMILRAHT LRGLAGNIGA TGLSRLAGDL
EERLKQNASV KEAGIENLLG SLAENLPKVL AAAEKLRQET PQITPAPLQE AQQGTLSELQ
HLLDNDDAAA VRYFEQISAW LKQEFEPRLV DQLARQINQY EFDVAMETLQ QMTINRQQV
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