Gene Daro_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_0001 
SymboldnaA 
ID3570025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp151 
End bp1548 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content55% 
IMG OID637678430 
Productchromosomal replication initiation protein 
Protein accessionYP_283230 
Protein GI71905643 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0000010295 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.002869 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCTGGTT TCTGGGAATC CTGTTTGCAG CGCTTCGAGC AGGAATTGCC CGCGCAACAA 
TTCAATACCT GGATCAAGCC GCTCCGGCTC GAAGGTGAAT CCACAGCCCT GGAAGATGGC
CTGCGCCTGA TTGCGCCCAA TGGTTTCATC CTGAAGTGGG TGCGCGACCG TTACCTGACA
CGGATCGAAG ACTACAGTCG CACCTTCTTT GAAGGTCCGG TCACCATTGC GCTGGTCATC
GGCAGTGGCA AGGCGACAGC CGCCAGAATT CAAGCAACAA CGACTGATTC AGGCCAAAAT
GCACCGGCCA ATCCGGCGAC TACCTCGGAA AAACGGACTG CCGCCTCGGA AAAGGCGCGG
GGCAAGGGTA GCAATTACGA AAAGTCCCGG CTCTTTCCGT CATTCACCTT TGACAATCTG
GTGGTTGGCA AGGCCAACGA TCTGGCCCGT GCCGCAGCCG TCCAGGTCGC CAATAATCCG
GGTGGAGCCT ACAACCCGCT GTTTATCTAT GGCGGGGCTG GCCTCGGCAA GACTCACCTG
ATTCACGCGA TTGGCAACAC CATCGCCACC GAGAATCCGG AAAAGATCGT TCGTTACGTA
CATGCGGAAG ATTATTACTC CGACGTTGTT CGGGCCTATC AGCAGAAGTC TTTCGATAGT
TTCAAGCGGA CTTACCGCTC ACTTGATGTG CTGCTGCTGG ACGATGTGCA GTTCTTTAAT
GGCAAGAACC GTTCACAGGA AGAGTTCTTT TTCCTGTTCA ATGCGCTGAT TGAGGCCCGC
AAGCAGATCA TCATCACCTG CGATACCTAT CCCAAGGATA TCAACGGCCT TGACGACCGT
CTGGTCACCC GTTTCGACTG GGGGCTGACC GTACAGATCG AACCGCCGGA ACTGGAAATG
CGGGTCGCCA TTCTGAAGAA GAAGGCGGAA GCTGAAGGTA TCCAGCTCGA TGACGAAGTT
GCCTTCTTTA TTGCCAAGCA CCTGCGTTCC AATGTTCGCG AGCTGGAAGG TGCCCTGAAG
AAGGTGCTGG CCTATTCTTC CTTCCATGGT CGCGTTATTG CGCTGGACCT GGCCAAGGAA
GCCCTGAAGG ATGTCATCGG CTCCGTGCGC AATGTGGGCA TGGACAACAT CCAGAAGACC
GTTGCCGACT ATTACAAGAT CAAGGTTGCC GAGTTGTTCT CCAAGAAGCG CACACGCGCC
ATTGCCCGGC CACGTCAGGT TGCCATGTGG CTATGCCGCG AAGTGACCTC GCACAGTTTT
CCGGAAATCG GCGATGCCTT CGGTGGGCGT GATCACACCA CGGTCATTCA TGCAGTAAAA
ACGATCGATT CCCTGCGCAT CAAGGAAAAC GAACTCAATC ACGACCTGCA TGTTTTGCTG
CAAGTATTGA AAGGATGA
 
Protein sequence
MSGFWESCLQ RFEQELPAQQ FNTWIKPLRL EGESTALEDG LRLIAPNGFI LKWVRDRYLT 
RIEDYSRTFF EGPVTIALVI GSGKATAARI QATTTDSGQN APANPATTSE KRTAASEKAR
GKGSNYEKSR LFPSFTFDNL VVGKANDLAR AAAVQVANNP GGAYNPLFIY GGAGLGKTHL
IHAIGNTIAT ENPEKIVRYV HAEDYYSDVV RAYQQKSFDS FKRTYRSLDV LLLDDVQFFN
GKNRSQEEFF FLFNALIEAR KQIIITCDTY PKDINGLDDR LVTRFDWGLT VQIEPPELEM
RVAILKKKAE AEGIQLDDEV AFFIAKHLRS NVRELEGALK KVLAYSSFHG RVIALDLAKE
ALKDVIGSVR NVGMDNIQKT VADYYKIKVA ELFSKKRTRA IARPRQVAMW LCREVTSHSF
PEIGDAFGGR DHTTVIHAVK TIDSLRIKEN ELNHDLHVLL QVLKG