| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_2141 |
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| Symbol | ribD |
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| ID | 3516129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | - |
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| Start bp | 2644038 |
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| End bp | 2645093 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637670857 |
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| Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_265422 |
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| Protein GI | 71066695 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00293882 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAAATA TAAATCACTC TCAAGATGCA AAAGACCGTT ACTTTATGAT GCTGGCTATT
GAGCAGGCAA AGCTTGGCTT ATATAGCACA AGACCCAATC CTGCTGTTGG GTGTGTCATT
GTCCAAGCAG AGGAGGTGGT CGGTCAAGGG TTCCATCCTA AAGTCGGTCA GCCACATGCT
GAGGTATTTG CCCTAAAAGA TGCTGGTATA CGAGCAGTAG GCGCTACCGC GTATGTCACT
TTGGAACCCT GTAGTCATAC TGGACGTACC CCGCCTTGCG CAAAAGCGCT GATAGAGTCT
GGCGTCATAC GGGTTGTCGT TGCTGGGCTA GATCCAAATC CACAGGTCGC AGGTCGCGGG
GTGAGGTTGC TGGAGCAAGC AGGCATTGAG GTGACGGTTG GTATACTTAC CGCGCAGGCA
GAAGTGTTAA ATAAAGGTTT TCTAAAAGCC ATGCGTACCC AAATGCCTTA TGTGCGACTT
AAGATTGCGA CCAGTCTTGA TGGTCGTACG GCGATGGCAA CGGGAGAGTC AAAGTGGATT
ACAGGTCCTG CTGCTCGCGA AGACGTACAA AAGCTGCGGG CGCAAAGTGG CGCGATCATT
ACCGGTAGCG AAACGGTTAT CGTCGATAAT CCACAATTAA ATGTACGCTC TAGCCAACTG
GGTATCGCGC CTGAACAAGT CCCACATCCT AAAGTGGTGA TACTCGATAG GCGTGAGCGA
TTACAGTACA ATCTACAGTC AGATTACCAA TTGTGTCGAC GTACTGACAT ACTGTATTGG
CGTGATGATA ATTTGACGGA GTTATTAAAA GTATTGGTTA GTGAGTATCA GTGTTATGAC
GTGTTAATAG AAGCGGGTGC TAGTGTTGCT GGTAGCTTCT TACAACAGCA ATTGGTCGAT
GAGCTGATTG TGTATCAAGC GCCATGTCTG TTAGGGCAGC AAGCGCGTTC GATGGTTGAT
ATCAATCCAT TGTCGTTAGC ACAGCAGCTG CGCTTCGATA TTAAACGTTA TGAACAGCTT
GGTTCTGATA TGAAATTAAC CTTGATGCCA GTATAA
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| Protein sequence | MSNINHSQDA KDRYFMMLAI EQAKLGLYST RPNPAVGCVI VQAEEVVGQG FHPKVGQPHA
EVFALKDAGI RAVGATAYVT LEPCSHTGRT PPCAKALIES GVIRVVVAGL DPNPQVAGRG
VRLLEQAGIE VTVGILTAQA EVLNKGFLKA MRTQMPYVRL KIATSLDGRT AMATGESKWI
TGPAAREDVQ KLRAQSGAII TGSETVIVDN PQLNVRSSQL GIAPEQVPHP KVVILDRRER
LQYNLQSDYQ LCRRTDILYW RDDNLTELLK VLVSEYQCYD VLIEAGASVA GSFLQQQLVD
ELIVYQAPCL LGQQARSMVD INPLSLAQQL RFDIKRYEQL GSDMKLTLMP V
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