| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_2101 |
|---|
| Symbol | vacB |
|---|
| ID | 3516088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 2596480 |
|---|
| End bp | 2598795 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637670816 |
|---|
| Product | RNAse R |
|---|
| Protein accession | YP_265382 |
|---|
| Protein GI | 71066655 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000122542 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTGGA ATGATCCAAA CGCCTCAAGT GAGGCACAAA AATATGATAA CCCCATTCCT
AGTCGCGAGC TTATATTAAG CACGATTAAT GAACACGGTG AAATCACGCA TCAGCAATTG
GCAAAAGCCT TTAATATTGC TGATCCTGAT CAGTTTGACG CTTTAGGCAA TCGCTTAAAA
GCGATGACAC GCGATGGACA AGTCAATCGT GATGGTCGCC CTTATCGTTA TCGCACGGTC
ACTCAGCATG ATATCGTGAC CGGTACCGTA TCAGCGCACC CTAAAGGTTT TGGTTTTGTA
CTATTGAGTG ATATGCCTGA TTTGTTTTTA CATGAAAAAC AAATGCGTTG GGTCTTTAAT
GGCGATACGG TAGAAGCCGT TGGCACCTCA ACAGACAACC GCGGTCGTAC TGAAGGTCGC
ATCGTTGATG TCGTTGAGCG TCGTCAAAAC CATTTTATCG GTACACTTGC TCATGATGAA
GACGGTTACT GCGTCGAGCT TGGTAGCCCA AACAACCATC AGCCGATCAC CGTCACAGAA
GACAATGTAC AGGCTTTCAA TGCTAAGCAA GGATCACCAG TAAAAGTTGA TATTATTGAT
TGGCCAAATC AGCATGAATT CGCCACTGGT AAAATTACTG AAGTCTTGTC TGATGACAAT
GATCGCGAAC TCATCATTGA GACCACGTTA CTTAACTATG ATATTCCATC AGAATTCAGT
GAAGCGGTGC TTAATCAAGC AAATGATTAT CAAGAGCCTA CTGAAAAAGA TCTAAAGGGT
CGTGTCGACT TACGTGATTT ACCATTAGTG ACTATTGATG GTGAAGATGC CCGTGATTTT
GATGATGCAG TCTTTGCTGA AAAGCGTTCT GGTGGTAATT ATCGCGTCTT GGTAGCGATT
GCGGATGTCA GTTATTATGT GACACCGAAC TCACCACTTG ACCAAAATGC TTATGAGCGT
GGTACGTCAG TCTATTTCCC ACATCAAGTG ATTCCGATGT TGCCTGAAGT GCTGTCTAAT
GGTCTATGTT CACTGAACCC TAATCTTGAT CGCCTCTGTA TGGTTGCTGA TATTAAGATA
TCACGTGCTG GTAAAATCAC CAGTTATGAG TTTTATCCTG GTGTGATGCA TTCGCAAGCG
CGTTTGACTT ATAATCAAGT GAATGCGTAT CTTGAGAATC CAAAAGACAG TAGCGTTCCT
AAATCGTTAA CAGAAAATAA AGATGTCAAA AAATCTGTCG ATACCTTACA TCAATTGTAT
GAGTTGCTGC TTAAAAAACG TGAAGAACGT CATGCCATGG AATTTGAGAC TGTTGAAACT
TATATTAAGT TCAATGAAAA GGGTGGCATC GAAGCAATCT TGCCTCGTAC CCGTGGCGAT
GCTCAAAAGC TGATTGAAGA ATGTATGCTG CTTGCCAATA CTTGCGCGGC AAACTTTGCG
CTAAAAAATG AGCTGCCAGT TTTATATCGT AATCATGATA AGCCTGATGG CGAAAAATCG
ATGCGTATTC ACGAATATGC CAAAAACTTC GGTTTAAGTT TCCCAGAAGA GAACCCAACT
CAAGCAGATT ATCAGCGCAT TATTGAAGCG ACTAAAGAGC GTCCTGACGC GATCAGTATT
CATAGCATGC TGCTACGCTC AATGATGCAA GCAAACTATT CTCCGGATAA CATCGGTCAC
TTTGGTTTGG CTTATGACGA GTATAGTCAT TTTACCTCGC CGATTCGTCG TTATCCTGAC
TTAATGTTGC ATCGTGCGAT TAAAGCGGAA GTGACAAATA CCAAACAGCC TGTAATGGAT
TTTTCATTAG AAGGTGCTGG CATGCAAACC TCAGACACAG AGCGCCGCGC TGAGAAAGCA
TCGCGCTATG TGGAGTCATG GCTGAAGTGT CATTATATGA AAGACCATGT CGGCGAAGAG
TTCGATGGTG TCGTAACTAC CGTCACAAAC TTTGGTTTAT TCATTACCCT GACCGATTTG
TATATCGATG GTTTGGTGCA TATCTCAAAC GTCGGTGATG ATTTCTTCGT TTATGATGAG
CAGCAGCAAC AGCTGATCGG TAAAGATAGA GGCACAGTGT TTGGGCTGGG CGATTTGGTT
AAGGTGAAAG TAGCTGGCGT TAATATGGAT CTGCTACAAA TTGACTTTGG TTTACAAGCA
AAGCTGCAGT CTAGTAAAAT GAATCAAACT AAAAAAGATC ATTCGAACCG TAGTAGCCAG
TTAAACCAAA GTGCGACAAA CAAAGATCAG CCAAAGAAAT CACCTGCTAA GAAAAGTGGC
AGCCGTGGTG GTAGAGGCAA TAGCAAAAAG AGTTAA
|
|---|
| Protein sequence | MSWNDPNASS EAQKYDNPIP SRELILSTIN EHGEITHQQL AKAFNIADPD QFDALGNRLK
AMTRDGQVNR DGRPYRYRTV TQHDIVTGTV SAHPKGFGFV LLSDMPDLFL HEKQMRWVFN
GDTVEAVGTS TDNRGRTEGR IVDVVERRQN HFIGTLAHDE DGYCVELGSP NNHQPITVTE
DNVQAFNAKQ GSPVKVDIID WPNQHEFATG KITEVLSDDN DRELIIETTL LNYDIPSEFS
EAVLNQANDY QEPTEKDLKG RVDLRDLPLV TIDGEDARDF DDAVFAEKRS GGNYRVLVAI
ADVSYYVTPN SPLDQNAYER GTSVYFPHQV IPMLPEVLSN GLCSLNPNLD RLCMVADIKI
SRAGKITSYE FYPGVMHSQA RLTYNQVNAY LENPKDSSVP KSLTENKDVK KSVDTLHQLY
ELLLKKREER HAMEFETVET YIKFNEKGGI EAILPRTRGD AQKLIEECML LANTCAANFA
LKNELPVLYR NHDKPDGEKS MRIHEYAKNF GLSFPEENPT QADYQRIIEA TKERPDAISI
HSMLLRSMMQ ANYSPDNIGH FGLAYDEYSH FTSPIRRYPD LMLHRAIKAE VTNTKQPVMD
FSLEGAGMQT SDTERRAEKA SRYVESWLKC HYMKDHVGEE FDGVVTTVTN FGLFITLTDL
YIDGLVHISN VGDDFFVYDE QQQQLIGKDR GTVFGLGDLV KVKVAGVNMD LLQIDFGLQA
KLQSSKMNQT KKDHSNRSSQ LNQSATNKDQ PKKSPAKKSG SRGGRGNSKK S
|
|---|
| |