Gene Psyc_2083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_2083 
Symbol 
ID3516060 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp2558347 
End bp2561457 
Gene Length3111 bp 
Protein Length1036 aa 
Translation table11 
GC content48% 
IMG OID637670788 
ProductRND superfamily multidrug efflux system protein 
Protein accessionYP_265364 
Protein GI71066637 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.334854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATGA ATGTATCTAC CTATTCAATT AAAAATCCAC TTGTTGCGAT TTTATTATTT 
GTCTTACTAA CACTCGGCGG TTTGTTTGGC TTTCAACAGA TGAAAGTGCA GCAGTTCCCT
GATATTGATT TACCAGCGGT CGTAGTGACG GTTACTTTGC CCGGAGCCGC ACCGTCGCAG
CTCGAAAATG ATGTCGCTAA AAAGATTGAA AATAGGCTGA CTAGTATTGA AGGTATTAAG
CACATTCGTA CTACCTTACA AACCGGTGCA GCTACTATCG CTACTGAGTT TGTATTAGAA
AAAGACATTC AAGAAGCGAT GGATGATGTA CGCTCAGCAG TCGGTGAGGT ACGTGGAGAC
TTACCCGCAG CCGCGAATGA TCCTATTATT ACCAAGGTCT CAACAGCAGG ATTTCCAGTA
GTCACGTATT CAGTGACTGG AAATAATATG AGTGTTGAGG ACTTATCCTG GTTCGTTGAT
GACACTATTA CCAAGCGCTT ATCTGATATC CAAGGGGTAA GCGCTATCAG TCGTATTGGT
GGTCTTGAGC GTGAGATTAC CGTTGCCGCT GACCCTATCG TGCTCAGTGG CTTGCAACTC
TCTATCCCTC AATTATCTCA GCAGATCGCC GGTATTCAGC AAGACAGCGC AGGCGGAGAA
GCCGAAGTTG GCAATACTAC CCAAACCATT CGAGTGTTGG GAGCAGTAGA GCGCGCTCGC
GAGCTTAACG ATTTGCAGAT AGCTGTACCT ACTGGAGGCA CGCAAGCGTT AGGGCGTATG
GCTGAAGTAA CGGATGGTGC GGCTAATCCT AGCTCTGTTG CCAAGCTAGA TGGCGAAACA
GTCGTTGCAT TCAACATCAC CCGCTCACGC GGTGCTAGTG AAGTTGAAGT TACCAAGAGA
GTGGATGAAG CACTGGCGCA GTTAAGTGCT GAGATGAGTA ATATTGAGGT CGAGAAAGTC
TACGACCGTG CTACCCCAGT GGCAGAAGAT TATGAGTCTT CATTACGCAT GTTGATTGAG
GGCGGTATTT TAGCAGTCGT GGTGGTGTTC TTATTCTTAC GCAATATTCG CGCTACTATC
GTTGCCGCTG TGGCATTGCC TTTGTCGGTC ATTCCTACCT TTTTGGGGAT GTATCTGTTT
GATTTCAGCC TCAATATCAT CTCATTATTG GCGTTATCCT TGGTCATCGG TGTGCTGGTC
GATGACGCTA TCGTTGAGGT CGAAAACATT ATTCGCCATT TACGGATGGG TAAGACGCCT
TATGAAGCGG CGATGGAAGC TGCTGACGAA ATCGGTCTTG CGGTTATTGC CACTACCTTT
ACCTTGATTG CAGTATTTTT ACCTACAGCC TTTATGGGCG GTGTAGTTGG GCAGTTCTTC
CGCCAATTTG GCTGGACAGC AGCGATGGCT ATTTTTGCCT CGCTGTTGGT AGCACGTTTA
ATTACGCCCA TGATGGCGGC CTACATTTTG CGACCAGAAA AACAGCGGGT CGAAAAGCAA
AGCGCATTGA TGACATGGTA TTTAAAGATA GTATCGTGGA CACTTCATCA TCGCTGGTTA
ACCATGGGCG CCACCTTGTT ATTATTTGTA GGGTCATTAG CTTTGGTGCA GCTGCTACCA
ACCTCGTTTA TTCCTGATAA TGACATCGAC CAAACGCGAG TAGGCATTGA GCTGACCCCT
GATGTTGAAC TCGAAGATAC CGAACGGGTA ACGGCATTAG CACGTGAACG CATTCTAGCT
CTGCCTGAGG TAACTCATGT TTTCTCCTCA GTTGGGCAGG CGCAAGAAGC AATGGGGCCA
AACTCTAGTA GTGGAAGCGG TGGCGCAAAA AATATCGCCA GTCTAGATAT CGTCCTCGCC
CCACGTGCCG AACGTATCTC TAAAAAAGAG ATCGAGCAAC AGATTAGTGC CATATTGACA
GAAGTGCCCA GTGCACGCTT TACGGTAGGG CTATCGAGTG GCGGTGAGAC GGGATATAGC
TTTTCATTGA CCAGTACCAA TCCGCAAGTG CTAGAACAGA CCGCGCAACA AATCATGACG
GATATCCGCG CACTACAGAT TGCAGGCGCT GTCACCAGTG ATCGCAGCTT ACCGCAACAA
GAGCTGACCG TGACCCCTGA TCGGCTAGCG ATGGCAGATA AAGGTGTCAC CACACAAGAT
ATCGCAACCA CCTTACGGAT AGCGACAGTG GGTGATTATG AACAACGTCT GTCCAAGCTG
AATTTGGATA CGCGGCAGAT TCCTATTGTG GTGCGCTTAC CCGATGTGGC CAAACAAAAC
GTCAATCAGT TAGAAGGGTT GTATGTGCCT AGTACACGCC CAGCCGGTCA AGGCGTACGA
GTCGGCGAAG TCGCTGATCT CAATTTTGGC ACAGGTCCAG CACAAATCAG CCGTCTCGAT
CGTGAACGCT CAATTACTGT TACGGTGCAG CCTGGTGCTG GCGAGCTTGG TGATTTGGTA
GAAGCGGTTA AAAATACCCC TACTATGCAG CAACTACCAG CCTCTATTAC GATGATTGCA
CAGGGTCAAG CGGAAAACAT GGCTGAGCTA TTTAGCGGTT TTGTCATTGC CATGTCCGTA
GGTATTATCT GTATCTTAGG CGTCTTAATT CTACTGTTTG GTAAGCTTTT ACAGCCTTTT
ACTATTTTGA TGGCACTGCC ACTATCGATA GGCGGTGCAT TCGTGGGTTT GGTCATTACG
AGCAGTAGCC TATCGATGCC TTCGATGATT GGTTTTATTA TGCTAATGGG TATCGCCACC
AAAAACTCTA TTTTACTAGT GGACTATGCC ATTATTGCGC AGCGCCGTGG GTTGGAACGT
TTTGAGGCAA TTATAGATGC ATGTCGCAAG CGCGCCCGTC CTATCATTAT GACTACTATT
GCAATGGGTG CTGGCATGTT GCCGCTCGTA TTTGGCTGGG GTGATGCTGA TCCTACTTTC
AGACGCCCGA TGGCTGCTGC TGTGTTAGGT GGTCTGGTAA CCTCGACGCT ATTAAGTTTG
GTCGTGATTC CAGTCGTATA TACTTTGATG GATGACTTGT CAGGGTGGTT TGCTAAATGG
TTGATTCCGC ACGGTAAAGA CAACGACAGT CCGGCTGCTG ATAAGTTATA G
 
Protein sequence
MNMNVSTYSI KNPLVAILLF VLLTLGGLFG FQQMKVQQFP DIDLPAVVVT VTLPGAAPSQ 
LENDVAKKIE NRLTSIEGIK HIRTTLQTGA ATIATEFVLE KDIQEAMDDV RSAVGEVRGD
LPAAANDPII TKVSTAGFPV VTYSVTGNNM SVEDLSWFVD DTITKRLSDI QGVSAISRIG
GLEREITVAA DPIVLSGLQL SIPQLSQQIA GIQQDSAGGE AEVGNTTQTI RVLGAVERAR
ELNDLQIAVP TGGTQALGRM AEVTDGAANP SSVAKLDGET VVAFNITRSR GASEVEVTKR
VDEALAQLSA EMSNIEVEKV YDRATPVAED YESSLRMLIE GGILAVVVVF LFLRNIRATI
VAAVALPLSV IPTFLGMYLF DFSLNIISLL ALSLVIGVLV DDAIVEVENI IRHLRMGKTP
YEAAMEAADE IGLAVIATTF TLIAVFLPTA FMGGVVGQFF RQFGWTAAMA IFASLLVARL
ITPMMAAYIL RPEKQRVEKQ SALMTWYLKI VSWTLHHRWL TMGATLLLFV GSLALVQLLP
TSFIPDNDID QTRVGIELTP DVELEDTERV TALARERILA LPEVTHVFSS VGQAQEAMGP
NSSSGSGGAK NIASLDIVLA PRAERISKKE IEQQISAILT EVPSARFTVG LSSGGETGYS
FSLTSTNPQV LEQTAQQIMT DIRALQIAGA VTSDRSLPQQ ELTVTPDRLA MADKGVTTQD
IATTLRIATV GDYEQRLSKL NLDTRQIPIV VRLPDVAKQN VNQLEGLYVP STRPAGQGVR
VGEVADLNFG TGPAQISRLD RERSITVTVQ PGAGELGDLV EAVKNTPTMQ QLPASITMIA
QGQAENMAEL FSGFVIAMSV GIICILGVLI LLFGKLLQPF TILMALPLSI GGAFVGLVIT
SSSLSMPSMI GFIMLMGIAT KNSILLVDYA IIAQRRGLER FEAIIDACRK RARPIIMTTI
AMGAGMLPLV FGWGDADPTF RRPMAAAVLG GLVTSTLLSL VVIPVVYTLM DDLSGWFAKW
LIPHGKDNDS PAADKL