Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyc_2083 |
Symbol | |
ID | 3516060 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter arcticus 273-4 |
Kingdom | Bacteria |
Replicon accession | NC_007204 |
Strand | - |
Start bp | 2558347 |
End bp | 2561457 |
Gene Length | 3111 bp |
Protein Length | 1036 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637670788 |
Product | RND superfamily multidrug efflux system protein |
Protein accession | YP_265364 |
Protein GI | 71066637 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.334854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATGA ATGTATCTAC CTATTCAATT AAAAATCCAC TTGTTGCGAT TTTATTATTT GTCTTACTAA CACTCGGCGG TTTGTTTGGC TTTCAACAGA TGAAAGTGCA GCAGTTCCCT GATATTGATT TACCAGCGGT CGTAGTGACG GTTACTTTGC CCGGAGCCGC ACCGTCGCAG CTCGAAAATG ATGTCGCTAA AAAGATTGAA AATAGGCTGA CTAGTATTGA AGGTATTAAG CACATTCGTA CTACCTTACA AACCGGTGCA GCTACTATCG CTACTGAGTT TGTATTAGAA AAAGACATTC AAGAAGCGAT GGATGATGTA CGCTCAGCAG TCGGTGAGGT ACGTGGAGAC TTACCCGCAG CCGCGAATGA TCCTATTATT ACCAAGGTCT CAACAGCAGG ATTTCCAGTA GTCACGTATT CAGTGACTGG AAATAATATG AGTGTTGAGG ACTTATCCTG GTTCGTTGAT GACACTATTA CCAAGCGCTT ATCTGATATC CAAGGGGTAA GCGCTATCAG TCGTATTGGT GGTCTTGAGC GTGAGATTAC CGTTGCCGCT GACCCTATCG TGCTCAGTGG CTTGCAACTC TCTATCCCTC AATTATCTCA GCAGATCGCC GGTATTCAGC AAGACAGCGC AGGCGGAGAA GCCGAAGTTG GCAATACTAC CCAAACCATT CGAGTGTTGG GAGCAGTAGA GCGCGCTCGC GAGCTTAACG ATTTGCAGAT AGCTGTACCT ACTGGAGGCA CGCAAGCGTT AGGGCGTATG GCTGAAGTAA CGGATGGTGC GGCTAATCCT AGCTCTGTTG CCAAGCTAGA TGGCGAAACA GTCGTTGCAT TCAACATCAC CCGCTCACGC GGTGCTAGTG AAGTTGAAGT TACCAAGAGA GTGGATGAAG CACTGGCGCA GTTAAGTGCT GAGATGAGTA ATATTGAGGT CGAGAAAGTC TACGACCGTG CTACCCCAGT GGCAGAAGAT TATGAGTCTT CATTACGCAT GTTGATTGAG GGCGGTATTT TAGCAGTCGT GGTGGTGTTC TTATTCTTAC GCAATATTCG CGCTACTATC GTTGCCGCTG TGGCATTGCC TTTGTCGGTC ATTCCTACCT TTTTGGGGAT GTATCTGTTT GATTTCAGCC TCAATATCAT CTCATTATTG GCGTTATCCT TGGTCATCGG TGTGCTGGTC GATGACGCTA TCGTTGAGGT CGAAAACATT ATTCGCCATT TACGGATGGG TAAGACGCCT TATGAAGCGG CGATGGAAGC TGCTGACGAA ATCGGTCTTG CGGTTATTGC CACTACCTTT ACCTTGATTG CAGTATTTTT ACCTACAGCC TTTATGGGCG GTGTAGTTGG GCAGTTCTTC CGCCAATTTG GCTGGACAGC AGCGATGGCT ATTTTTGCCT CGCTGTTGGT AGCACGTTTA ATTACGCCCA TGATGGCGGC CTACATTTTG CGACCAGAAA AACAGCGGGT CGAAAAGCAA AGCGCATTGA TGACATGGTA TTTAAAGATA GTATCGTGGA CACTTCATCA TCGCTGGTTA ACCATGGGCG CCACCTTGTT ATTATTTGTA GGGTCATTAG CTTTGGTGCA GCTGCTACCA ACCTCGTTTA TTCCTGATAA TGACATCGAC CAAACGCGAG TAGGCATTGA GCTGACCCCT GATGTTGAAC TCGAAGATAC CGAACGGGTA ACGGCATTAG CACGTGAACG CATTCTAGCT CTGCCTGAGG TAACTCATGT TTTCTCCTCA GTTGGGCAGG CGCAAGAAGC AATGGGGCCA AACTCTAGTA GTGGAAGCGG TGGCGCAAAA AATATCGCCA GTCTAGATAT CGTCCTCGCC CCACGTGCCG AACGTATCTC TAAAAAAGAG ATCGAGCAAC AGATTAGTGC CATATTGACA GAAGTGCCCA GTGCACGCTT TACGGTAGGG CTATCGAGTG GCGGTGAGAC GGGATATAGC TTTTCATTGA CCAGTACCAA TCCGCAAGTG CTAGAACAGA CCGCGCAACA AATCATGACG GATATCCGCG CACTACAGAT TGCAGGCGCT GTCACCAGTG ATCGCAGCTT ACCGCAACAA GAGCTGACCG TGACCCCTGA TCGGCTAGCG ATGGCAGATA AAGGTGTCAC CACACAAGAT ATCGCAACCA CCTTACGGAT AGCGACAGTG GGTGATTATG AACAACGTCT GTCCAAGCTG AATTTGGATA CGCGGCAGAT TCCTATTGTG GTGCGCTTAC CCGATGTGGC CAAACAAAAC GTCAATCAGT TAGAAGGGTT GTATGTGCCT AGTACACGCC CAGCCGGTCA AGGCGTACGA GTCGGCGAAG TCGCTGATCT CAATTTTGGC ACAGGTCCAG CACAAATCAG CCGTCTCGAT CGTGAACGCT CAATTACTGT TACGGTGCAG CCTGGTGCTG GCGAGCTTGG TGATTTGGTA GAAGCGGTTA AAAATACCCC TACTATGCAG CAACTACCAG CCTCTATTAC GATGATTGCA CAGGGTCAAG CGGAAAACAT GGCTGAGCTA TTTAGCGGTT TTGTCATTGC CATGTCCGTA GGTATTATCT GTATCTTAGG CGTCTTAATT CTACTGTTTG GTAAGCTTTT ACAGCCTTTT ACTATTTTGA TGGCACTGCC ACTATCGATA GGCGGTGCAT TCGTGGGTTT GGTCATTACG AGCAGTAGCC TATCGATGCC TTCGATGATT GGTTTTATTA TGCTAATGGG TATCGCCACC AAAAACTCTA TTTTACTAGT GGACTATGCC ATTATTGCGC AGCGCCGTGG GTTGGAACGT TTTGAGGCAA TTATAGATGC ATGTCGCAAG CGCGCCCGTC CTATCATTAT GACTACTATT GCAATGGGTG CTGGCATGTT GCCGCTCGTA TTTGGCTGGG GTGATGCTGA TCCTACTTTC AGACGCCCGA TGGCTGCTGC TGTGTTAGGT GGTCTGGTAA CCTCGACGCT ATTAAGTTTG GTCGTGATTC CAGTCGTATA TACTTTGATG GATGACTTGT CAGGGTGGTT TGCTAAATGG TTGATTCCGC ACGGTAAAGA CAACGACAGT CCGGCTGCTG ATAAGTTATA G
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Protein sequence | MNMNVSTYSI KNPLVAILLF VLLTLGGLFG FQQMKVQQFP DIDLPAVVVT VTLPGAAPSQ LENDVAKKIE NRLTSIEGIK HIRTTLQTGA ATIATEFVLE KDIQEAMDDV RSAVGEVRGD LPAAANDPII TKVSTAGFPV VTYSVTGNNM SVEDLSWFVD DTITKRLSDI QGVSAISRIG GLEREITVAA DPIVLSGLQL SIPQLSQQIA GIQQDSAGGE AEVGNTTQTI RVLGAVERAR ELNDLQIAVP TGGTQALGRM AEVTDGAANP SSVAKLDGET VVAFNITRSR GASEVEVTKR VDEALAQLSA EMSNIEVEKV YDRATPVAED YESSLRMLIE GGILAVVVVF LFLRNIRATI VAAVALPLSV IPTFLGMYLF DFSLNIISLL ALSLVIGVLV DDAIVEVENI IRHLRMGKTP YEAAMEAADE IGLAVIATTF TLIAVFLPTA FMGGVVGQFF RQFGWTAAMA IFASLLVARL ITPMMAAYIL RPEKQRVEKQ SALMTWYLKI VSWTLHHRWL TMGATLLLFV GSLALVQLLP TSFIPDNDID QTRVGIELTP DVELEDTERV TALARERILA LPEVTHVFSS VGQAQEAMGP NSSSGSGGAK NIASLDIVLA PRAERISKKE IEQQISAILT EVPSARFTVG LSSGGETGYS FSLTSTNPQV LEQTAQQIMT DIRALQIAGA VTSDRSLPQQ ELTVTPDRLA MADKGVTTQD IATTLRIATV GDYEQRLSKL NLDTRQIPIV VRLPDVAKQN VNQLEGLYVP STRPAGQGVR VGEVADLNFG TGPAQISRLD RERSITVTVQ PGAGELGDLV EAVKNTPTMQ QLPASITMIA QGQAENMAEL FSGFVIAMSV GIICILGVLI LLFGKLLQPF TILMALPLSI GGAFVGLVIT SSSLSMPSMI GFIMLMGIAT KNSILLVDYA IIAQRRGLER FEAIIDACRK RARPIIMTTI AMGAGMLPLV FGWGDADPTF RRPMAAAVLG GLVTSTLLSL VVIPVVYTLM DDLSGWFAKW LIPHGKDNDS PAADKL
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