Gene Psyc_1952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_1952 
Symbol 
ID3515921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp2404530 
End bp2406005 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content45% 
IMG OID637670650 
Producttransglycolase 
Protein accessionYP_265234 
Protein GI71066507 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.135275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTTGT CTCATTTGTC CACCTTGTCT TTATTGACTG CAGCTATTGG TTTAAGCCTT 
GCCAGCACCG CCCAAGCTGC CAAATCAGAC GCACCAAACT TGTCTAATAC TCAATTTCAA
CAGTGCTTGG ATGATCTAAA AAACTCTAGC AAATTTCGTG GTGTCGATAG CTATACTTTT
AATAACTATC GCCCATCTCA GCCTGATCCA AGTGTGATTC AATCGCTCAA CTATCAGCCT
GAATTTCAGA AAGATGTCTG GGATTATTTA TCTTCGCTCG TTGACACCGA ACGAGTAGCA
GATGGTATCC AAGCCAAACG TCAATGGGCA GATACTTTGC GTAAAATTGA ATCGCGTTAT
GGCGTCAAAG CCGAGCACGT ATTAGGCGTT TGGGGCGTGG AGTCTAACTT TGGGCAGACA
TTGGGCAAAA AACCTTTATT TGAATCTTTA GCGACCTTGT CTTGCTTTGA TCGTCGTCAA
AGCTATTTTC AAGGCGAATA TGCCAATGCC TTAAAAATCG TACAAAACGG TGATATTGCG
CCAAGCGATA TGACGGGCTC ATGGGCAGGC GCTTTTGGGC AAACGCAATT TATGCCAAGC
ACATTTCTAG AATTGGCGGT TGATTTCGAT GGTGATGGTC GTCGCGACTT GGTCAATAGT
GTTCCTGATG CACTCGCCTC TACCGCTAAC TTTTTAGATA AGCGCGGCTA TCGTTCAGGC
GAAGCATGGG GTTATGAAGT TAAACTGCCA AGTGGGTTTT GGGCAGCTTC TAATCGTAAA
GATAAAAAAT CGATGAGTCA CTGGCGTAAT CAAGGCTTAA CCCTTGCTAA TGGTAGCCCG
TTGCCTTCCG ACTTGAGTAG TGCTGGATTA TTATTACCTG CTGGTAAAGA CGGTCCTGCA
TTTTTAGTTG GTAAAAATTT CGATACTTTT TATTCCTACA ATGCATCAGA AAGCTATGCA
CTGGCGATTG CTCATTTATC GGATTTGATT ACTCGCGAAG ATAGCAGTAA AACTGACTTT
ATCACAGCTT GGCCAACTGA TGACCCTGGT ATTGGTCGCC AAGAATCCAG AGCGATTCAG
CAAGCATTAT TGAACGCAGG CTATGACATT GGCGCAGTCG ATGGCATTAT CGGTGATAAT
ACTCGTACTG CCATTCAGCA ATACCAGTCT AGTCGTGGTA TTTTTCCGGC TGATGGACGC
GCAGGGCAGA AATTTTATCG TGCCATCGTG GGTAATGCGG CGCCTAACAA TTCACAATAT
GGTAATTCAT ATGGACAGCC AACAAACAGT CGTCCTTTAA AACCAGCGTC TGCTGATCGT
ATGGGACAAT TGATTCAACA GCAAAATACC ACGCCTAATA GCTACTCGCA GCCTACAGCG
ATTACTCCAT CAAACTCAGG CACAACGCGA TATCGTCGCG TCACAGGCGC CGATGGTGTC
ATCACACTGG TACGTATTGA TGAAGGCTTA TTATAG
 
Protein sequence
MRLSHLSTLS LLTAAIGLSL ASTAQAAKSD APNLSNTQFQ QCLDDLKNSS KFRGVDSYTF 
NNYRPSQPDP SVIQSLNYQP EFQKDVWDYL SSLVDTERVA DGIQAKRQWA DTLRKIESRY
GVKAEHVLGV WGVESNFGQT LGKKPLFESL ATLSCFDRRQ SYFQGEYANA LKIVQNGDIA
PSDMTGSWAG AFGQTQFMPS TFLELAVDFD GDGRRDLVNS VPDALASTAN FLDKRGYRSG
EAWGYEVKLP SGFWAASNRK DKKSMSHWRN QGLTLANGSP LPSDLSSAGL LLPAGKDGPA
FLVGKNFDTF YSYNASESYA LAIAHLSDLI TREDSSKTDF ITAWPTDDPG IGRQESRAIQ
QALLNAGYDI GAVDGIIGDN TRTAIQQYQS SRGIFPADGR AGQKFYRAIV GNAAPNNSQY
GNSYGQPTNS RPLKPASADR MGQLIQQQNT TPNSYSQPTA ITPSNSGTTR YRRVTGADGV
ITLVRIDEGL L