| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1879 |
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| Symbol | pilQ |
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| ID | 3515848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | - |
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| Start bp | 2315518 |
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| End bp | 2317788 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637670576 |
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| Product | fimbrial assembly protein PilQ |
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| Protein accession | YP_265161 |
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| Protein GI | 71066434 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000275793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTAC GCAATAACAA GGTAATGATG ATGAGCAACC GCGTATCTTC TGCTTTTGCC
ATCTCGGCAT TGGCAATGAG TATGGTAGCC GTAAGTAGCA GTGCCTATGC CGAGCAGCGC
ATCAACAATG TCTCTGTGAT TCAGACTGCG CCAGCCGTAA CCCAAATGCG TTTGGGATTT
TCAGGTGCGC CAGTATTACC AGCCGCTTAT CAGCTTGACA ATCCTAGCCG TTTGGTACTG
GACTTTGAAC AGGTGCAAAA CGGGCTTGCC AGTCGTTTTA AAGAATATAA TATCGGTATG
GTCAATGAAG TTACGACCTT AAACAGCGAC AATACCACCC GTCTTATTGT CGGGTTAAAA
AAAACGGGTA ACTATACTAC TGCAATTGAC GGCAATGAGT TGTTGCTGAC CATTACAGAT
CCTAAGCGTC CGGTGATTTC TCCGGTGGTC ACTAAAGTGA TTACCAATGA TCCTGTACAA
GATGTGTTAA ATGGCAATGC TGCTATTACT ACCACCGCTG TGGTCACGCC AATTGTCGAA
AGCAGTAGTG TCGCTGTTGC TCCGATTAGA ACCACAGTCA CAAAAACCCA GGTGCCTGCT
GATACTATGG TCGTACGCGT CAATCCTTTA TTAAGCCCGC AACTTGCCTC AGCACAAGTC
AGTAAACAGT ATAGCTATGA TGGTTTAAGC GCTGTGAATT TTTCAGCGGG GAATGATGGC
GGTGGCAATG TCAGTATCTC ACTTGCCAAT GAAGCCATTC CAGTAGACGT TCAACGTCAA
GGTAATAAGC TGGTTGTGCG TTTGACTGGC AGCACGGTAC CTAGAAATTT GCTGCGCCGC
TTGAATGTTA ATAGCGGTTT GGTAGACAGT ATTGATACCA AAAATCAAAG TCAAAATGGT
GTTATTACCA TCAATATGAA AGAGGATTTT GAATACCAAG CCTATCAATC AGGGAATCAG
CTAAACATCG GTATCAGAAG ACCCGAGCTG CTACGTGAGC CGACGCTTGA AGAAAAAGTA
TATACCGGTG CAGCATTATC TATGGAGTTT CAAGACGTTG AGATTCGTAG CGTCCTAGAT
ATTTTAGCGC AGTTTACAGA GATGAATATC GTTGCGAGTG ATTCGGTCGC CGGCAATATC
ACCTTACGCC TGATTAATGT ACCTTGGGAT CAAGCGCTCG ATATCATTCT TAAAAGTAAA
AATCTTGGCA AGCGTGAAAA CGGTAACGTG ATTTTGGTTG CGCCCTCAAC TGAGCTTGCG
GAACAAGAAG CAAGTGAGCT TGCAGCACAA CAAGCGGTCG AGTCTTACGC GCCGTTACGT
ACTGAATATA TCCGTCTAAG CTACGCAAAA GCGGCAGATG TCTTAACCCT TATCTCTCAA
GGTAGTGGCG GCGCCTCTGG CGGTAGCACT ACCGGCACAG CTAATACCAA TCCGACCGAT
AGTAATAGCT TGCTGTCTAA TCGTGGTACG GTAACAGTCG ATGAGCGTAC CAACACTTTG
ATTGTCAAAG ATGTGGCAGC CAGTATCGAA AACATCCATA AACTCATTGG CAAAATCGAT
ATTCCTGTTC GTCAAGTCAT GATTGAGGCA CGTATCGTTA GCGCCAGCGA TAGCTTTAGT
AAGGAGCTTG GGGTACGTTG GGGTATTTTG TTTGATGGCA AACCCGATGA TAACCGTCTG
ACATCTAGTG GCTTGAACGT TGATTTGGGT ATTTCAAACC CTGCAAGTGT TGCTTTTGGT
ATCTTGAAGG TATCAGATGT GATGCTTGAT CTTGAGCTGT TGGCTATGCA AGCAGACAAC
CGCGGTGAAG TGATTTCTAC GCCAAAGATT CTGACCTCGG ATAAACAAAC GGCAAAAATA
TCCTCTGGTA CGCAGATTCC TTATCAAGAA GCATCAGCCA GTGGCGCGAC CACCACCAGC
TTTAAAGAAG CTGCCTTAAG TTTAGAGGCC ACGCCGAACA TTACCCCAGA TGGTAAGATT
GGTTTGCAGC TGTTAATCAC CAATGGCACA CCGACCATTA TCAACAATCA GGTTGCCATC
GCTGAAGACT CTATTTCAAC TAACGTTATT GTTGAAGACG GTCAAACCAT TGTACTGGGT
GGCGTCTTTA AGAATCGTAC TAATAATGGG GTTGATAAAG TGCCTTTCTT AGGTGACTTA
CCTTATATCG GTCGCGCCTT CCGTAAAGAT GTGCGCAGCA ATACCAAAGA AGAGCTGCTG
ATATTTATCA CACCAAAACT GATCAATGAT GGTATTAGTC GCTTAGATTA G
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| Protein sequence | MTVRNNKVMM MSNRVSSAFA ISALAMSMVA VSSSAYAEQR INNVSVIQTA PAVTQMRLGF
SGAPVLPAAY QLDNPSRLVL DFEQVQNGLA SRFKEYNIGM VNEVTTLNSD NTTRLIVGLK
KTGNYTTAID GNELLLTITD PKRPVISPVV TKVITNDPVQ DVLNGNAAIT TTAVVTPIVE
SSSVAVAPIR TTVTKTQVPA DTMVVRVNPL LSPQLASAQV SKQYSYDGLS AVNFSAGNDG
GGNVSISLAN EAIPVDVQRQ GNKLVVRLTG STVPRNLLRR LNVNSGLVDS IDTKNQSQNG
VITINMKEDF EYQAYQSGNQ LNIGIRRPEL LREPTLEEKV YTGAALSMEF QDVEIRSVLD
ILAQFTEMNI VASDSVAGNI TLRLINVPWD QALDIILKSK NLGKRENGNV ILVAPSTELA
EQEASELAAQ QAVESYAPLR TEYIRLSYAK AADVLTLISQ GSGGASGGST TGTANTNPTD
SNSLLSNRGT VTVDERTNTL IVKDVAASIE NIHKLIGKID IPVRQVMIEA RIVSASDSFS
KELGVRWGIL FDGKPDDNRL TSSGLNVDLG ISNPASVAFG ILKVSDVMLD LELLAMQADN
RGEVISTPKI LTSDKQTAKI SSGTQIPYQE ASASGATTTS FKEAALSLEA TPNITPDGKI
GLQLLITNGT PTIINNQVAI AEDSISTNVI VEDGQTIVLG GVFKNRTNNG VDKVPFLGDL
PYIGRAFRKD VRSNTKEELL IFITPKLIND GISRLD
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