| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1722 |
|---|
| Symbol | ispH |
|---|
| ID | 3515690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 2122039 |
|---|
| End bp | 2122995 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637670418 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_265004 |
|---|
| Protein GI | 71066277 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATTT ATCTTGCCAA TCCACGTGGG TTTTGTGCTG GTGTGGATCG CGCGATTGCG
ATTGTCAACG AAGCACTGTT ACGTTTTGAG CCACCCATCT ATGTCCGTCA TGAAGTGGTA
CACAACAAGT TCGTGGTCTC CGATTTAGCC AATCGTGGCG CTGTGTTTGT CGAAGAATTG
CATGAAGTAC CAGACGGCTC TATTGTTATT TTTTCAGCTC ACGGGGTTTC AAAAGCTGTC
GAAGATGAAG CAGAGCGTCG TGATTTGACG GTATTTGATG CCACTTGTCC TTTAGTCACC
AAAGTACATA TCGAAGTCGC TAAATTTGCG CAGGATGGTA TGGATGCGGT ATTGATTGGA
CATGCGGGAC ATCCTGAAGT AGAAGGCACT ATGGGACGCT TTAACCATCG TCATGGCGGA
CGGATTCATC TGGTCGAAAA CGAGAGCGAC GTTGAAGCCT TGAGCGTACA AGATGCCGAG
CGTTTGGCAT TTGTGACTCA AACGACCTTA TCGATGGATG ATACTGCTCG TGTTATCGAT
GCGCTGAGAG AAAAGTTCCC GCATATTCAA GGCCCGCGTA AAGACGATAT CTGTTATGCC
ACCCAAAATC GTCAGGATGC GGTGAAGCAT TTAGCCAGTC GCTGTGAGGT GGTCTTGGTC
GTTGGTTCAC CAAACTCATC AAACTCAAAT CGTTTGCGGG AATTGGCAGA GCGTATGAAT
TGCCGCGCTT ATTTGATTGA TAATGCCACT GAAATGGATA TCAATTGGTT CGATGGTATA
CAAAGCGTGG GTGTGACTGC TGGTGCTTCA GCGCCTGAGG TATTGATTCA AGAGGTACTA
CAGCAGCTGC AAGATTGGGG TGGTGATTTG CCAAGTGAGC TGTCGGGTAT TGAAGAAAAT
GTCACTTTTA GCTTACCAAA GGCCTTACGA ATTCCAATGA CGCAAGTGGG TAAATAA
|
|---|
| Protein sequence | MQIYLANPRG FCAGVDRAIA IVNEALLRFE PPIYVRHEVV HNKFVVSDLA NRGAVFVEEL
HEVPDGSIVI FSAHGVSKAV EDEAERRDLT VFDATCPLVT KVHIEVAKFA QDGMDAVLIG
HAGHPEVEGT MGRFNHRHGG RIHLVENESD VEALSVQDAE RLAFVTQTTL SMDDTARVID
ALREKFPHIQ GPRKDDICYA TQNRQDAVKH LASRCEVVLV VGSPNSSNSN RLRELAERMN
CRAYLIDNAT EMDINWFDGI QSVGVTAGAS APEVLIQEVL QQLQDWGGDL PSELSGIEEN
VTFSLPKALR IPMTQVGK
|
|---|
| |