| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1660 |
|---|
| Symbol | topA |
|---|
| ID | 3515628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 2055885 |
|---|
| End bp | 2058563 |
|---|
| Gene Length | 2679 bp |
|---|
| Protein Length | 892 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637670356 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_264942 |
|---|
| Protein GI | 71066215 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000915276 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.794129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAC CCACAACCAA AAAAAGCGCA GCGCCCGCTG CAGACAAACC CAAAGGCAGC
CCAAAAGGTA AGTCTTTAGT GATTGTTGAA TCACCTGCCA AGGCAAAAAC CATCAATAAA
TACTTGGGTG ATGATTTTAT CGTGCGCTCA AGTATCGGTC ATGTCCGAGA TTTGCCCGTT
GGTGCGAGCA AAAGCGCAAA GAAACCAGCA ACGACCAAAA AAGATGACAT CCTGACCAAA
GAAGAAAAAA CTCAGCAAGC ATTGGTACGG CGCATGGGTA TTGACCCTGA GCATGATTGG
GCGGCAGTCT ATGAAGTGTT GCCAAACAAG ACCAAGGTCA TTAAAGAGCT GAAAGCCTTA
GCCAAAGACG CTGATAAAAT CTATCTCGCG ACGGATATGG ATAGAGAGGG AGAAGCCATT
GCTTGGCATC TCAAAGAAGT GATTGGCGGC GCAGACAGTA AATATGAGCG CGTGGTCTTT
AACGAGATTA CCAAATCTGC TATTCAAAAT GCTTTTAAGC AGCCTTCTAA ACTTGATATT
GACCGCGTCA ATGCGCAACA AGCGCGGCGC TTTTTAGACC GTGTGGTTGG TTTTATGGTA
TCGCCATTAC TGTGGCAAAA GGTCGCGCGC GGTTTATCTG CGGGTCGCGT ACAGTCAGTT
GCTATGCGCT TGGTCGTTGA GCGTGAACAC GAAATCCGCG CCTTTATTCC AGAAGAGTAT
TGGCAGATTC ATGCCGATAC CCATATTGTT GATAATAAAG ATAAAAAAGC CACAGACGCT
GAGCAAATTG GTATTCGTTT AGAAGCTACC AAGCAAGGCG GCAAAACGCT AAAGCTCGTT
AATAAAGAGC AGACCGATAA AGTATTAGAT GTTCTTAAAG CAAATGACTT TATCGTTAAA
GAACGTGAAG AAAAGCCAAC GCAGTCACGT CCAAGCGCGC CTTTTATTAC CTCGACTTTG
CAACAAGCTG CCAGTACAAG ATTAGGATTT TCGGTTAAGA AAACCATGAT TTTAGCGCAG
CGCTTATATG AAGCCGGTCA TATCACTTAT ATGCGTACCG ATTCAACCTT TTTATCAGGC
GATGCGCTGG CTGCTGTACG TGGTTATATT GAAGACAGCT ATGGCGCAAA ATATGTGCCA
GAAAAGCCAA CCTTCTATGG TAATAAGCAA GGCGCACAAG AGGCGCATGA AGCGATTCGT
CCGTCTAACG TCAATATGAA ATCAACGCAG CTTAAAGCTG TTGAGCGTGA TGCGATACGT
TTGTATGAGC TAATTTGGCG TCAGTTTGTG GCCTGTCAGA TGCTACCAGC AAAATATTTA
TCAGTAAATT TATTCGTTGC TGCTGATGAT GTCGAGCTAA AAGCGCGCGG TCGCACCTTG
GTATTTGATG GTTATACCAA AGTCATGCCA CCTGCCAAGA CCGACGACAA TTTATTACCT
GATGTCAAAA AAGGGGATAA GTTAACGGTA GATAAACTTG ATCCAAGCCA GCATTTTACC
AAGCCGCCAC CGCGCTATAC TGAGGCAAGC TTGGTTAAAG AGCTTGAGAA AAAAGGCATT
GGTCGTCCAT CGACATATGC TTCTATCATC TCGACCATTC AAGATCGTGG TTATGTGAAG
CTCGAGAATA AGCGTTTATT TGCCGAAAAA ATGGGTGATA TTGTCACTGA CAGACTGACG
GCAAGTTTTC CGGATTTGAT GGATTATACT TTTACCGCAG CGTTAGAAGA TAAACTGGAC
CATGTTGCTG AAGGTGATAC AAACTGGAAG GATGTACTTG ATAATTTCTA CGGGGATTTC
AAGACTACCC TTGATCGCGC TAAAGAAAAA GACGGCATGC GCCCGAATGA TCCGACCGAT
GTACCAGACG TGCATTGCGA TCTTTGTGAT CGTCCGATGC AACTGCGTAC CGGTTCTACC
GGTGTATTCT TAGGTTGTAC CGGTTATAAC TTACCGCCGA AAGAACGCTG TAAAGGCACT
AAGAACTTAA TGCCAGTCGA AGCTTTTGCC AATCTTGATG ATGCAGAAGG TGATGATGAA
GCGGCAGAAG TCCGAGATTT GATGGAGAAA AAGCGTTGCC CGAAATGTAG CACGGCAATG
AATGGTTATA TTGTAGATGG CGGTCTTAAG CTACATGTTT GTGGTAATAA TCCTGATTGT
GATGGTTATG TCTTAGAAGA AGGCAAGTTT GAAGTTCCTG GTTCTGACTC TCCAACCATT
GACTGCAATA AGTGCGATGG ACAAATGGAG CTTAAGACGG GACGCTTTGG TCCTTACTTC
GCTTGCCAGC AATGTGACAA TACCCGTAAA GTGCTCAAAA CGGGTGAAGC AGCACCGCCG
CGCATGGATC CTATTCATCT GCCAGAGCTA AAATCAGTGA AGCATGAGGA TTACTTTATC
TTGCGTGAAG GGGCTGCCGG GATGTTCTTA GCAGCATCTA AGTTTCCTAA AGTACGGGAA
ACGCGTCCAC CAAAGCTTGC TGAGCTAAGA GAGATTAAAG ATAAAATGGA AGATAAATTC
CAGTATCTGT TTGAAGGACC AGATGAAGAT CCTGATGGTA ATCCTACGAT TCTGCGTTGG
TCACGTAAGA AAAAAGAGCA GTATATTGGC TCTGAGAAAA ATGGTAAAGC CACACGCTGG
GGCGTGTACT GGCGCAAAGG TGAGTGGGTA GAGGAGTGA
|
|---|
| Protein sequence | MTKPTTKKSA APAADKPKGS PKGKSLVIVE SPAKAKTINK YLGDDFIVRS SIGHVRDLPV
GASKSAKKPA TTKKDDILTK EEKTQQALVR RMGIDPEHDW AAVYEVLPNK TKVIKELKAL
AKDADKIYLA TDMDREGEAI AWHLKEVIGG ADSKYERVVF NEITKSAIQN AFKQPSKLDI
DRVNAQQARR FLDRVVGFMV SPLLWQKVAR GLSAGRVQSV AMRLVVEREH EIRAFIPEEY
WQIHADTHIV DNKDKKATDA EQIGIRLEAT KQGGKTLKLV NKEQTDKVLD VLKANDFIVK
EREEKPTQSR PSAPFITSTL QQAASTRLGF SVKKTMILAQ RLYEAGHITY MRTDSTFLSG
DALAAVRGYI EDSYGAKYVP EKPTFYGNKQ GAQEAHEAIR PSNVNMKSTQ LKAVERDAIR
LYELIWRQFV ACQMLPAKYL SVNLFVAADD VELKARGRTL VFDGYTKVMP PAKTDDNLLP
DVKKGDKLTV DKLDPSQHFT KPPPRYTEAS LVKELEKKGI GRPSTYASII STIQDRGYVK
LENKRLFAEK MGDIVTDRLT ASFPDLMDYT FTAALEDKLD HVAEGDTNWK DVLDNFYGDF
KTTLDRAKEK DGMRPNDPTD VPDVHCDLCD RPMQLRTGST GVFLGCTGYN LPPKERCKGT
KNLMPVEAFA NLDDAEGDDE AAEVRDLMEK KRCPKCSTAM NGYIVDGGLK LHVCGNNPDC
DGYVLEEGKF EVPGSDSPTI DCNKCDGQME LKTGRFGPYF ACQQCDNTRK VLKTGEAAPP
RMDPIHLPEL KSVKHEDYFI LREGAAGMFL AASKFPKVRE TRPPKLAELR EIKDKMEDKF
QYLFEGPDED PDGNPTILRW SRKKKEQYIG SEKNGKATRW GVYWRKGEWV EE
|
|---|
| |