| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1599 |
|---|
| Symbol | |
|---|
| ID | 3515564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 1955141 |
|---|
| End bp | 1957396 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637670292 |
|---|
| Product | ABC drug efflux transporter, fused ATPase and inner mebrane subunits |
|---|
| Protein accession | YP_264881 |
|---|
| Protein GI | 71066154 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.164249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAG AATTTAAGCT GACAACCGCA GATTTAGAGA GTAACCAGAT GAGCAATATG
GCGGATCAAG TGTTGACGTC ATCTGAGTTG ATACAGACTT TGGCTGATGC CATTAGGCAC
TTATTGAGCC AGCAAGGCTA TCCGATAGAC AATGTGCGTT TGCAGGAAGT GGTCACCCGC
TATGATGGCA GGTCAGCCAA TGATACAGGT CAAGTCATTA ATGAGCTTGG TAGCGTCGTT
GCTGTATTAA AAGATATGGG AATAGATAAG ACGCCAGAAA TACTAGAGCA GCCAGACGCG
GCCTTTTTAC CTTTATTGGC CTATCGCTCA GATATGGGCT GGGGTGTGAT CGACAGTCAA
ACGCCGCAAA AAAGCTGGAA TTTCAGACAA GAGAAAAACC ATATTTATAC GCGTACTGAT
GAGCTGACAT TGGTTCTAAG GATTCACCTT AGTGATGAAC ATATTCAAAA ACGTAAATCC
TCTTTTACGG ACTTATTGAG GTCTGATTTA GGCAACTATA AAGGCGTTCT TTTCGAAGCT
GTTCTGGCCA CCTTCTTGAT TAATATGTTG GCATTGGCAG TGTCGTTGTT CTCTATGCAG
GTTTATGATC GAGTCATACC TACTCGCAGT GAATATACGC TCATTATTTT GGCCAGTGGT
GTCTTTCTCG TTATCCTTTT TGAAGCGTTT ATGAAGTTCT CACGGTCGAG AATTATGGAC
AAAGTCGTTG TGGGATTGGA TCAATACTTG TCCCGTGAGG TGTTTCAACG TCTGCTGAAA
GTCCGTATAG ATCAGATGCC AGGCTCAGTA GGCTCTATGG CTGCGCAATT GCGTGGTTAC
GAGCAAGTAC GTAGCTTTTT TACGGCCAGT ACCTTGTTTG GATTGGTCGA TTTACCCATG
ACCATTATTT TTATCTCTTT AGTTGCTTTT ATTGGGTCAC CATTAGTGGC GGTCGTTCCT
GTCATTGCAG CTGTGATTGC TATCGCTATG GGATTGTTCG CTCGTAAGCG TATTGATGCG
ATTGCTGCTG AAGGTGCTAC TGCCTCTTAC TATAAGACGG GTCTGTTGGT CGAAGCTGTT
GAGGGCGTTG AAACCATCAA AGCGGGAGCA GGAAGTTGGA AATTCTTATC ACGTTGGCTG
GATGTGATGA AGGTCACTAT CAAAAACGAT TTAGACATGA AGCACACCAA CGATAATTTG
ACCTATTTTA CACAGATGCT GCAACAGATT AGCTATGTTG GGATTGTGAT TGTAGGGTCA
TTTGTGGTGA TCAGCGGTGA TATGACAATG GGTGGACTGA TTGCCTGCTC GATATTGGGT
GGTAGGGTGT TAGCCCCCGT TATGATGCTG CCTAATCTGT TGGTCCAATA TTCACATGCC
AAGGCCGCTA AGCTCAATAT TGAAACTTTG TTTTCATTAG AGCAGGACAA TCATGGCGTT
GCTTACCCAC TGTCACCCAG TCGTATTAAT GGTTTTTATC AATGTGAAAA CTTAGTATTT
AATTATCAAG GTAATGATAG AGCTGCTATA GATATTAAAA AATTAACGAT TCGTCCAGGG
GAGCGTATTG CCATTCTAGG ACCTATCGGC TCAGGCAAGT CTACATTACT TAAGATACTC
GCTGGATTAT ATGCACCTAC TAAAGGACGG GTCTTGTTAG ATGGTCTTGA TATTCATCAG
ATCAGTCGCG AGACATTAAG TGAGCGTTTG GGTTATCTAC AACAAGATCA TCGTTTATTT
CAAGGAACGC TGAGAGAGAA CTTACTGATA GGAATGGCAG CGCCTAATGA TGATGTGATG
CAAGAGGTGC TGATCAAGAC TGGACTGATA AATTTGGTCT CTAGCCATTC TAGTGGTCTT
GATCTGCCTA TTAGCGAAGG TGGACGCGGA CTGTCCGGAG GGCAGAAACA ACTTGTTGCT
TTCACGCGTT TATTATTGAC TAAGCCAAAT GTATTTTTAC TCGATGAGCC CACTGCCTCT
ATGGACAATA GGCAAGAACA GCGCTGTCTT CAAATACTCA AGCAGGAACT GACAGAAGGT
CAAACTTTTA TCGTCTCAAC TCATAAAACT GCATTATTAG AGTTGGCTGA TAGACTTATT
ATTATGGACA ATCAACGCAT CATTATCGAT GGTCCAAAGC AAGCAGTACT TGATGAATTA
ATGAAAAATG AGCAAGCTAA AAATCCGCCT GCACAATCGC AAAATTCTAA AAGTATAGCG
AAGCCTATCA TCACTAAAAC GCTCACAGAC GCTTAA
|
|---|
| Protein sequence | MSEEFKLTTA DLESNQMSNM ADQVLTSSEL IQTLADAIRH LLSQQGYPID NVRLQEVVTR
YDGRSANDTG QVINELGSVV AVLKDMGIDK TPEILEQPDA AFLPLLAYRS DMGWGVIDSQ
TPQKSWNFRQ EKNHIYTRTD ELTLVLRIHL SDEHIQKRKS SFTDLLRSDL GNYKGVLFEA
VLATFLINML ALAVSLFSMQ VYDRVIPTRS EYTLIILASG VFLVILFEAF MKFSRSRIMD
KVVVGLDQYL SREVFQRLLK VRIDQMPGSV GSMAAQLRGY EQVRSFFTAS TLFGLVDLPM
TIIFISLVAF IGSPLVAVVP VIAAVIAIAM GLFARKRIDA IAAEGATASY YKTGLLVEAV
EGVETIKAGA GSWKFLSRWL DVMKVTIKND LDMKHTNDNL TYFTQMLQQI SYVGIVIVGS
FVVISGDMTM GGLIACSILG GRVLAPVMML PNLLVQYSHA KAAKLNIETL FSLEQDNHGV
AYPLSPSRIN GFYQCENLVF NYQGNDRAAI DIKKLTIRPG ERIAILGPIG SGKSTLLKIL
AGLYAPTKGR VLLDGLDIHQ ISRETLSERL GYLQQDHRLF QGTLRENLLI GMAAPNDDVM
QEVLIKTGLI NLVSSHSSGL DLPISEGGRG LSGGQKQLVA FTRLLLTKPN VFLLDEPTAS
MDNRQEQRCL QILKQELTEG QTFIVSTHKT ALLELADRLI IMDNQRIIID GPKQAVLDEL
MKNEQAKNPP AQSQNSKSIA KPIITKTLTD A
|
|---|
| |